TabInOut by nikolamilosevic86

Framework for information extraction from tables

updated at July 3, 2023, 7:18 p.m.

5 +0

41 +0

10 +0

anafora by weitechen

Anafora is a web-based raw text annotation tool

updated at Feb. 11, 2024, 12:53 p.m.

22 +0

238 +0

55 +0

pubrunner by jakelever

A framework for keeping biomedical text mining result up-to-date

updated at Feb. 26, 2024, 4:56 p.m.

7 +0

41 +0

6 +0

Bio-SCoRes by kilicogluh

A smorgasbord architecture for coreference resolution in biomedical text

updated at March 12, 2024, 12:40 p.m.

6 +0

9 +0

1 +0

DeepPhe-Release by DeepPhe

Public release of the DeepPhe analytic software

updated at April 25, 2024, 12:09 p.m.

12 +0

29 +0

10 +0

CRAFT by UCDenver-ccp

None

updated at May 3, 2024, 3:08 p.m.

12 +0

67 +0

15 +0

CogStack-SemEHR by CogStack

Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research

updated at May 22, 2024, 9:06 a.m.

25 +0

87 +0

19 +0

MedTator by OHNLP

A Serverless Text Annotation Tool for Corpus Development

updated at May 28, 2024, 12:21 p.m.

4 +0

47 +0

16 +1

biolink-model by biolink

Schema and generated objects for biolink data model and upper ontology

updated at June 5, 2024, 11:13 a.m.

24 +1

168 +0

71 +0

rentrez by ropensci

talk with NCBI entrez using R

updated at June 10, 2024, 5:24 p.m.

14 +0

192 +0

40 +0

cord19 by allenai

Get started with CORD-19

updated at June 10, 2024, 9:54 p.m.

13 +0

153 +0

20 +0

BioWordVec by ncbi-nlp

None

updated at June 12, 2024, 9:01 a.m.

11 +0

141 +0

29 +0

ctakes by apache

Apache cTAKES is a Natural Language Processing (NLP) platform for clinical text.

updated at June 14, 2024, 8:52 p.m.

12 +0

39 +0

9 +0

clinicalBERT by EmilyAlsentzer

repository for Publicly Available Clinical BERT Embeddings

updated at June 15, 2024, 8:33 a.m.

25 +0

634 +0

128 +1

biobert-pretrained by naver

BioBERT: a pre-trained biomedical language representation model for biomedical text mining

updated at June 15, 2024, 8:47 p.m.

26 +0

641 +0

85 +0

med7 by kormilitzin

None

updated at June 17, 2024, 3:10 a.m.

14 +0

198 +1

25 +0

medaCy by NLPatVCU

Medical Text Mining and Information Extraction with spaCy

updated at June 17, 2024, 6:12 p.m.

26 +0

424 +1

91 +1

brat by nlplab

brat rapid annotation tool (brat) - for all your textual annotation needs

updated at June 18, 2024, 1:46 p.m.

80 +0

1,789 +4

510 +0

bluebert by ncbi-nlp

BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).

updated at June 19, 2024, 6:19 a.m.

23 +0

540 +1

77 +0

biobert by dmis-lab

Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining

updated at June 20, 2024, 11:37 a.m.

63 +0

1,874 +0

445 +0