TabInOut by nikolamilosevic86

Framework for information extraction from tables

updated at July 3, 2023, 7:18 p.m.

5 +0

41 +0

10 +0

anafora by weitechen

Anafora is a web-based raw text annotation tool

updated at Feb. 11, 2024, 12:53 p.m.

22 +0

238 +0

55 +0

pubrunner by jakelever

A framework for keeping biomedical text mining result up-to-date

updated at Feb. 26, 2024, 4:56 p.m.

7 +0

41 +0

6 +0

CogStack-SemEHR by CogStack

Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research

updated at March 1, 2024, 10:58 a.m.

25 +0

86 +0

19 +0

Bio-SCoRes by kilicogluh

A smorgasbord architecture for coreference resolution in biomedical text

updated at March 12, 2024, 12:40 p.m.

6 +0

9 +0

1 +0

MedTator by OHNLP

A Serverless Text Annotation Tool for Corpus Development

updated at April 16, 2024, 5:19 p.m.

4 +0

46 +0

15 +0

DeepPhe-Release by DeepPhe

Public release of the DeepPhe analytic software

updated at April 25, 2024, 12:09 p.m.

12 +0

29 +0

10 +0

cord19 by allenai

Get started with CORD-19

updated at April 27, 2024, 5:48 p.m.

13 +0

149 +0

21 +0

rentrez by ropensci

talk with NCBI entrez using R

updated at May 1, 2024, 3:50 p.m.

14 +0

190 +0

40 +0

CRAFT by UCDenver-ccp

None

updated at May 3, 2024, 3:08 p.m.

12 +0

67 +0

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medaCy by NLPatVCU

Medical Text Mining and Information Extraction with spaCy

updated at May 3, 2024, 6:47 p.m.

26 +0

423 +0

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BioWordVec by ncbi-nlp

None

updated at May 6, 2024, 12:52 a.m.

11 +0

138 +0

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biobert-pretrained by naver

BioBERT: a pre-trained biomedical language representation model for biomedical text mining

updated at May 8, 2024, 1:42 a.m.

26 +0

632 +0

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bluebert by ncbi-nlp

BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).

updated at May 8, 2024, 3:57 p.m.

23 +0

538 +0

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clinicalBERT by EmilyAlsentzer

repository for Publicly Available Clinical BERT Embeddings

updated at May 10, 2024, 2:24 a.m.

25 +0

631 +0

127 +1

med7 by kormilitzin

None

updated at May 10, 2024, 8:37 p.m.

14 +0

197 +0

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biolink-model by biolink

Schema and generated objects for biolink data model and upper ontology

updated at May 14, 2024, 7:56 p.m.

23 +0

167 +0

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brat by nlplab

brat rapid annotation tool (brat) - for all your textual annotation needs

updated at May 15, 2024, 9:27 a.m.

80 +0

1,780 +1

510 +0

clinicalBERT by kexinhuang12345

ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)

updated at May 15, 2024, 11:07 p.m.

14 -1

349 +1

91 +0

biobert by dmis-lab

Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining

updated at May 16, 2024, 12:11 p.m.

63 +2

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