HumanDiseaseOntology by DiseaseOntology

Repository for the Human Disease Ontology.

updated at June 23, 2024, 1:33 a.m.

20 +0

329 +1

108 +0

biopython by biopython

Official git repository for Biopython (originally converted from CVS)

updated at June 22, 2024, 1:41 p.m.

168 +0

4,222 +3

1,727 +0

scispacy by allenai

A full spaCy pipeline and models for scientific/biomedical documents.

updated at June 22, 2024, 12:09 a.m.

52 +0

1,636 +2

223 +1

BioGPT by Microsoft

None

updated at June 21, 2024, 4:09 p.m.

70 +0

4,249 +3

441 +2

scibert by allenai

A BERT model for scientific text.

updated at June 21, 2024, 3:46 p.m.

49 +0

1,460 +4

214 +0

clinicalBERT by kexinhuang12345

ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)

updated at June 21, 2024, 12:47 p.m.

14 +0

360 +2

92 +0

CommonDataModel by OHDSI

Definition and DDLs for the OMOP Common Data Model (CDM)

updated at June 20, 2024, 3:20 p.m.

123 +0

850 +1

442 +1

mimic-code by MIT-LCP

MIMIC Code Repository: Code shared by the research community for the MIMIC family of databases

updated at June 20, 2024, 12:51 p.m.

137 +0

2,393 +7

1,493 +1

biobert by dmis-lab

Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining

updated at June 20, 2024, 11:37 a.m.

63 +0

1,874 +0

445 +0

bluebert by ncbi-nlp

BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).

updated at June 19, 2024, 6:19 a.m.

23 +0

540 +1

77 +0

brat by nlplab

brat rapid annotation tool (brat) - for all your textual annotation needs

updated at June 18, 2024, 1:46 p.m.

80 +0

1,789 +4

510 +0

medaCy by NLPatVCU

Medical Text Mining and Information Extraction with spaCy

updated at June 17, 2024, 6:12 p.m.

26 +0

424 +1

91 +1

med7 by kormilitzin

None

updated at June 17, 2024, 3:10 a.m.

14 +0

198 +1

25 +0

biobert-pretrained by naver

BioBERT: a pre-trained biomedical language representation model for biomedical text mining

updated at June 15, 2024, 8:47 p.m.

26 +0

641 +0

85 +0

clinicalBERT by EmilyAlsentzer

repository for Publicly Available Clinical BERT Embeddings

updated at June 15, 2024, 8:33 a.m.

25 +0

634 +0

128 +1

ctakes by apache

Apache cTAKES is a Natural Language Processing (NLP) platform for clinical text.

updated at June 14, 2024, 8:52 p.m.

12 +0

39 +0

9 +0

BioWordVec by ncbi-nlp

None

updated at June 12, 2024, 9:01 a.m.

11 +0

141 +0

29 +0

cord19 by allenai

Get started with CORD-19

updated at June 10, 2024, 9:54 p.m.

13 +0

153 +0

20 +0

rentrez by ropensci

talk with NCBI entrez using R

updated at June 10, 2024, 5:24 p.m.

14 +0

192 +0

40 +0

biolink-model by biolink

Schema and generated objects for biolink data model and upper ontology

updated at June 5, 2024, 11:13 a.m.

24 +1

168 +0

71 +0