TabInOut by nikolamilosevic86

Framework for information extraction from tables

updated at July 3, 2023, 7:18 p.m.

5 +0

41 +0

10 +0

pubrunner by jakelever

A framework for keeping biomedical text mining result up-to-date

updated at Feb. 26, 2024, 4:56 p.m.

7 +0

41 +0

6 +0

BioWordVec by ncbi-nlp

None

updated at Oct. 7, 2024, 9:31 a.m.

11 +0

144 +0

29 +0

medaCy by NLPatVCU

Medical Text Mining and Information Extraction with spaCy

updated at Oct. 16, 2024, 7:42 a.m.

27 +0

432 +0

91 +0

bluebert by ncbi-nlp

BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).

updated at Oct. 28, 2024, 12:03 p.m.

23 +0

558 +0

78 +0

brat by nlplab

brat rapid annotation tool (brat) - for all your textual annotation needs

updated at Nov. 11, 2024, 7:44 p.m.

80 +0

1,824 +1

509 +0

biolink-model by biolink

Schema and generated objects for biolink data model and upper ontology

updated at Nov. 12, 2024, 2:18 p.m.

26 +0

177 +1

73 +1

biopython by biopython

Official git repository for Biopython (originally converted from CVS)

updated at Nov. 14, 2024, 3:58 p.m.

168 -1

4,392 +7

1,759 +2

scispacy by allenai

A full spaCy pipeline and models for scientific/biomedical documents.

updated at Nov. 14, 2024, 5:08 p.m.

52 +0

1,709 +2

228 -1

clinicalBERT by EmilyAlsentzer

repository for Publicly Available Clinical BERT Embeddings

updated at Nov. 15, 2024, 6:14 a.m.

25 +0

674 +1

135 +0

BioGPT by Microsoft

None

updated at Nov. 16, 2024, 11:59 a.m.

71 +0

4,307 +6

452 +0

scibert by allenai

A BERT model for scientific text.

updated at Nov. 17, 2024, 12:20 p.m.

52 +0

1,523 +2

217 +0

biobert by dmis-lab

Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining

updated at Nov. 17, 2024, 12:57 p.m.

62 +0

1,954 +7

453 +1