Bio-SCoRes by kilicogluh

A smorgasbord architecture for coreference resolution in biomedical text

created at Feb. 12, 2016, 6:57 p.m.

6 +0

9 +0

1 +0

pubrunner by jakelever

A framework for keeping biomedical text mining result up-to-date

created at Aug. 30, 2017, 9:30 p.m.

7 +0

41 +0

6 +0

TabInOut by nikolamilosevic86

Framework for information extraction from tables

created at April 7, 2016, 3:41 p.m.

5 +0

42 +1

10 +0

DeepPhe-Release by DeepPhe

Public release of the DeepPhe analytic software

created at Oct. 2, 2017, 4:27 p.m.

12 +0

30 +0

10 +0

ctakes by apache

Apache cTAKES is a Natural Language Processing (NLP) platform for clinical text.

created at Nov. 21, 2014, 8 a.m.

12 +0

51 +1

12 +0

CRAFT by UCDenver-ccp

None

created at April 30, 2018, 10:17 p.m.

12 +0

70 +0

15 +0

MedTator by OHNLP

A Serverless Text Annotation Tool for Corpus Development

created at Aug. 13, 2021, 7:08 p.m.

4 +0

54 +0

19 -1

CogStack-SemEHR by CogStack

Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research

created at Oct. 14, 2016, 10:21 a.m.

25 +0

89 +0

20 +0

cord19 by allenai

Get started with CORD-19

created at April 27, 2020, 1:48 a.m.

13 +0

162 +0

20 +0

med7 by kormilitzin

None

created at Feb. 26, 2020, 11:03 p.m.

13 +0

204 -1

26 +0

BioWordVec by ncbi-nlp

None

created at Feb. 22, 2019, 4:32 p.m.

11 +0

144 +0

29 +0

rentrez by ropensci

talk with NCBI entrez using R

created at Feb. 11, 2012, 11:44 p.m.

14 +0

196 +0

38 +0

anafora by weitechen

Anafora is a web-based raw text annotation tool

created at April 8, 2013, 4:44 p.m.

22 +0

241 +0

54 +0

biolink-model by biolink

Schema and generated objects for biolink data model and upper ontology

created at Dec. 4, 2017, 4:45 a.m.

26 +0

177 +0

73 +0

bluebert by ncbi-nlp

BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).

created at June 6, 2019, 2:02 p.m.

23 +0

558 +0

79 +1

biobert-pretrained by naver

BioBERT: a pre-trained biomedical language representation model for biomedical text mining

created at Jan. 28, 2019, 2:05 a.m.

26 +0

668 +1

88 +0

medaCy by NLPatVCU

Medical Text Mining and Information Extraction with spaCy

created at Sept. 28, 2018, 2:48 p.m.

27 +0

432 +0

91 +0

clinicalBERT by kexinhuang12345

ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)

created at March 30, 2019, 8:06 a.m.

14 +0

383 +2

98 +0

HumanDiseaseOntology by DiseaseOntology

Repository for the Human Disease Ontology.

created at Sept. 23, 2015, 2:48 p.m.

21 +0

348 +1

108 +0

clinicalBERT by EmilyAlsentzer

repository for Publicly Available Clinical BERT Embeddings

created at April 5, 2019, 8:50 p.m.

25 +0

675 +1

135 +0