TabInOut by nikolamilosevic86

Framework for information extraction from tables

updated at July 3, 2023, 7:18 p.m.

5 +0

41 +0

10 +0

anafora by weitechen

Anafora is a web-based raw text annotation tool

updated at Feb. 11, 2024, 12:53 p.m.

22 +0

238 +0

55 +0

pubrunner by jakelever

A framework for keeping biomedical text mining result up-to-date

updated at Feb. 26, 2024, 4:56 p.m.

7 +0

41 +0

6 +0

Bio-SCoRes by kilicogluh

A smorgasbord architecture for coreference resolution in biomedical text

updated at March 12, 2024, 12:40 p.m.

6 +0

9 +0

1 +0

DeepPhe-Release by DeepPhe

Public release of the DeepPhe analytic software

updated at April 25, 2024, 12:09 p.m.

12 +0

29 +0

10 +0

CRAFT by UCDenver-ccp

None

updated at May 3, 2024, 3:08 p.m.

12 +0

67 +0

15 +0

medaCy by NLPatVCU

Medical Text Mining and Information Extraction with spaCy

updated at May 3, 2024, 6:47 p.m.

26 +0

423 +0

91 +0

BioWordVec by ncbi-nlp

None

updated at May 6, 2024, 12:52 a.m.

11 +0

138 +0

29 +0

bluebert by ncbi-nlp

BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).

updated at May 8, 2024, 3:57 p.m.

23 +0

538 +0

77 +1

med7 by kormilitzin

None

updated at May 10, 2024, 8:37 p.m.

14 +0

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CogStack-SemEHR by CogStack

Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research

updated at May 22, 2024, 9:06 a.m.

25 +0

87 +0

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clinicalBERT by EmilyAlsentzer

repository for Publicly Available Clinical BERT Embeddings

updated at May 27, 2024, 4:38 p.m.

25 +0

632 +1

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cord19 by allenai

Get started with CORD-19

updated at May 28, 2024, 9:24 a.m.

13 +0

152 +2

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MedTator by OHNLP

A Serverless Text Annotation Tool for Corpus Development

updated at May 28, 2024, 12:21 p.m.

4 +0

47 +1

15 +0

rentrez by ropensci

talk with NCBI entrez using R

updated at May 29, 2024, 10:17 a.m.

14 +0

191 +1

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CommonDataModel by OHDSI

Definition and DDLs for the OMOP Common Data Model (CDM)

updated at May 29, 2024, 7:23 p.m.

124 +0

843 +2

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biolink-model by biolink

Schema and generated objects for biolink data model and upper ontology

updated at May 29, 2024, 10:48 p.m.

23 +0

168 +1

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scibert by allenai

A BERT model for scientific text.

updated at May 31, 2024, 1:57 p.m.

49 +0

1,448 +1

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clinicalBERT by kexinhuang12345

ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)

updated at May 31, 2024, 8:13 p.m.

14 +0

353 +1

91 +0

HumanDiseaseOntology by DiseaseOntology

Repository for the Human Disease Ontology.

updated at June 1, 2024, 9:39 a.m.

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328 +2

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