TabInOut by nikolamilosevic86

Framework for information extraction from tables

updated at July 3, 2023, 7:18 p.m.

5 +0

41 +0

10 +0

pubrunner by jakelever

A framework for keeping biomedical text mining result up-to-date

updated at Feb. 26, 2024, 4:56 p.m.

7 +0

41 +0

6 +0

Bio-SCoRes by kilicogluh

A smorgasbord architecture for coreference resolution in biomedical text

updated at March 12, 2024, 12:40 p.m.

6 +0

9 +0

1 +0

DeepPhe-Release by DeepPhe

Public release of the DeepPhe analytic software

updated at Sept. 2, 2024, 7:08 p.m.

12 +0

30 +0

10 +0

BioWordVec by ncbi-nlp

None

updated at Oct. 7, 2024, 9:31 a.m.

11 +0

144 +0

29 +0

anafora by weitechen

Anafora is a web-based raw text annotation tool

updated at Oct. 16, 2024, 6:02 a.m.

22 +0

241 +0

54 +0

medaCy by NLPatVCU

Medical Text Mining and Information Extraction with spaCy

updated at Oct. 16, 2024, 7:42 a.m.

27 +0

432 +0

91 +0

CogStack-SemEHR by CogStack

Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research

updated at Oct. 16, 2024, 1:28 p.m.

25 +0

89 +0

20 +0

rentrez by ropensci

talk with NCBI entrez using R

updated at Oct. 17, 2024, 3:37 p.m.

14 +0

196 +0

38 +0

CRAFT by UCDenver-ccp

None

updated at Oct. 18, 2024, 2:03 a.m.

12 +0

70 +0

15 +0

ctakes by apache

Apache cTAKES is a Natural Language Processing (NLP) platform for clinical text.

updated at Oct. 27, 2024, 12:42 p.m.

12 +0

50 +0

12 +1

bluebert by ncbi-nlp

BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).

updated at Oct. 28, 2024, 12:03 p.m.

23 +0

558 +0

78 +0

cord19 by allenai

Get started with CORD-19

updated at Nov. 3, 2024, 12:19 p.m.

13 +0

162 +0

20 +0

med7 by kormilitzin

None

updated at Nov. 3, 2024, 11:05 p.m.

13 +0

205 +0

26 +1

MedTator by OHNLP

A Serverless Text Annotation Tool for Corpus Development

updated at Nov. 7, 2024, 12:50 p.m.

4 +0

54 +0

20 +0

clinicalBERT by kexinhuang12345

ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)

updated at Nov. 11, 2024, 6:21 p.m.

14 +0

381 +1

98 +1

brat by nlplab

brat rapid annotation tool (brat) - for all your textual annotation needs

updated at Nov. 11, 2024, 7:44 p.m.

80 +0

1,824 +1

509 +0

biolink-model by biolink

Schema and generated objects for biolink data model and upper ontology

updated at Nov. 12, 2024, 2:18 p.m.

26 +0

177 +1

73 +1

biobert-pretrained by naver

BioBERT: a pre-trained biomedical language representation model for biomedical text mining

updated at Nov. 13, 2024, 1:39 a.m.

26 +0

667 +1

88 +0

biopython by biopython

Official git repository for Biopython (originally converted from CVS)

updated at Nov. 14, 2024, 3:58 p.m.

168 -1

4,392 +7

1,759 +2