scispacy by allenai

A full spaCy pipeline and models for scientific/biomedical documents.

updated at Nov. 23, 2024, 9:58 p.m.

52 +0

1,715 +6

229 +1

mimic-code by MIT-LCP

MIMIC Code Repository: Code shared by the research community for the MIMIC family of databases

updated at Nov. 23, 2024, 2:42 p.m.

135 +0

2,620 +12

1,528 +1

CommonDataModel by OHDSI

Definition and DDLs for the OMOP Common Data Model (CDM)

updated at Nov. 23, 2024, 10:24 a.m.

124 +0

897 +1

453 +2

BioGPT by Microsoft

None

updated at Nov. 23, 2024, 9:14 a.m.

71 +0

4,316 +9

451 -1

clinicalBERT by kexinhuang12345

ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)

updated at Nov. 23, 2024, 8:15 a.m.

14 +0

383 +2

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biopython by biopython

Official git repository for Biopython (originally converted from CVS)

updated at Nov. 23, 2024, 1:45 a.m.

169 +1

4,396 +4

1,763 +4

scibert by allenai

A BERT model for scientific text.

updated at Nov. 22, 2024, 3:16 a.m.

52 +0

1,526 +3

217 +0

HumanDiseaseOntology by DiseaseOntology

Repository for the Human Disease Ontology.

updated at Nov. 21, 2024, 1:07 p.m.

21 +0

348 +1

108 +0

brat by nlplab

brat rapid annotation tool (brat) - for all your textual annotation needs

updated at Nov. 20, 2024, 9:48 a.m.

80 +0

1,825 +1

509 +0

clinicalBERT by EmilyAlsentzer

repository for Publicly Available Clinical BERT Embeddings

updated at Nov. 20, 2024, 8:42 a.m.

25 +0

675 +1

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biobert by dmis-lab

Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining

updated at Nov. 20, 2024, 7:15 a.m.

62 +0

1,958 +4

453 +0

ctakes by apache

Apache cTAKES is a Natural Language Processing (NLP) platform for clinical text.

updated at Nov. 20, 2024, 12:58 a.m.

12 +0

51 +1

12 +0

biobert-pretrained by naver

BioBERT: a pre-trained biomedical language representation model for biomedical text mining

updated at Nov. 19, 2024, 2:48 a.m.

26 +0

668 +1

88 +0

med7 by kormilitzin

None

updated at Nov. 19, 2024, 12:39 a.m.

13 +0

204 -1

26 +0

TabInOut by nikolamilosevic86

Framework for information extraction from tables

updated at Nov. 19, 2024, 12:13 a.m.

5 +0

42 +1

10 +0

biolink-model by biolink

Schema and generated objects for biolink data model and upper ontology

updated at Nov. 12, 2024, 2:18 p.m.

26 +0

177 +0

73 +0

MedTator by OHNLP

A Serverless Text Annotation Tool for Corpus Development

updated at Nov. 7, 2024, 12:50 p.m.

4 +0

54 +0

19 -1

cord19 by allenai

Get started with CORD-19

updated at Nov. 3, 2024, 12:19 p.m.

13 +0

162 +0

20 +0

bluebert by ncbi-nlp

BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).

updated at Oct. 28, 2024, 12:03 p.m.

23 +0

558 +0

79 +1

CRAFT by UCDenver-ccp

None

updated at Oct. 18, 2024, 2:03 a.m.

12 +0

70 +0

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