BioGPT by Microsoft

None

created at Aug. 15, 2022, 5:55 a.m.

Python

71 +0

4,307 +6

452 +0

GitHub
MedTator by OHNLP

A Serverless Text Annotation Tool for Corpus Development

created at Aug. 13, 2021, 7:08 p.m.

JavaScript

4 +0

54 +0

20 +0

GitHub
cord19 by allenai

Get started with CORD-19

created at April 27, 2020, 1:48 a.m.

Unknown languages

13 +0

162 +0

20 +0

GitHub
med7 by kormilitzin

None

created at Feb. 26, 2020, 11:03 p.m.

Unknown languages

13 +0

205 +0

26 +1

GitHub
bluebert by ncbi-nlp

BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).

created at June 6, 2019, 2:02 p.m.

Python

23 +0

558 +0

78 +0

GitHub
clinicalBERT by EmilyAlsentzer

repository for Publicly Available Clinical BERT Embeddings

created at April 5, 2019, 8:50 p.m.

Python

25 +0

674 +1

135 +0

GitHub
clinicalBERT by kexinhuang12345

ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)

created at March 30, 2019, 8:06 a.m.

Jupyter Notebook

14 +0

381 +1

98 +1

GitHub
BioWordVec by ncbi-nlp

None

created at Feb. 22, 2019, 4:32 p.m.

Python

11 +0

144 +0

29 +0

GitHub
scibert by allenai

A BERT model for scientific text.

created at Jan. 30, 2019, 7 p.m.

Python

52 +0

1,523 +2

217 +0

GitHub
biobert-pretrained by naver

BioBERT: a pre-trained biomedical language representation model for biomedical text mining

created at Jan. 28, 2019, 2:05 a.m.

Unknown languages

26 +0

667 +1

88 +0

GitHub
biobert by dmis-lab

Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining

created at Jan. 24, 2019, 6:27 p.m.

Python

62 +0

1,954 +7

453 +1

GitHub
medaCy by NLPatVCU

hospital Medical Text Mining and Information Extraction with spaCy

created at Sept. 28, 2018, 2:48 p.m.

Python

27 +0

432 +0

91 +0

GitHub
scispacy by allenai

A full spaCy pipeline and models for scientific/biomedical documents.

created at Sept. 24, 2018, 9:45 p.m.

Python

52 +0

1,709 +2

228 -1

GitHub
CRAFT by UCDenver-ccp

None

created at April 30, 2018, 10:17 p.m.

Clojure

12 +0

70 +0

15 +0

GitHub
biolink-model by biolink

Schema and generated objects for biolink data model and upper ontology

created at Dec. 4, 2017, 4:45 a.m.

Python

26 +0

177 +1

73 +1

GitHub
DeepPhe-Release by DeepPhe

Public release of the DeepPhe analytic software

created at Oct. 2, 2017, 4:27 p.m.

Unknown languages

12 +0

30 +0

10 +0

GitHub
pubrunner by jakelever

A framework for keeping biomedical text mining result up-to-date

created at Aug. 30, 2017, 9:30 p.m.

Python

7 +0

41 +0

6 +0

GitHub
CogStack-SemEHR by CogStack

Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research

created at Oct. 14, 2016, 10:21 a.m.

JavaScript

25 +0

89 +0

20 +0

GitHub
TabInOut by nikolamilosevic86

Framework for information extraction from tables

created at April 7, 2016, 3:41 p.m.

Python

5 +0

41 +0

10 +0

GitHub
Bio-SCoRes by kilicogluh

A smorgasbord architecture for coreference resolution in biomedical text

created at Feb. 12, 2016, 6:57 p.m.

Java

6 +0

9 +0

1 +0

GitHub