mimic-code by MIT-LCP

MIMIC Code Repository: Code shared by the research community for the MIMIC family of databases

updated at Nov. 17, 2024, 11:43 p.m.

135 +0

2,608 +9

1,527 +4

biobert by dmis-lab

Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining

updated at Nov. 17, 2024, 12:57 p.m.

62 +0

1,954 +7

453 +1

scibert by allenai

A BERT model for scientific text.

updated at Nov. 17, 2024, 12:20 p.m.

52 +0

1,523 +2

217 +0

CommonDataModel by OHDSI

Definition and DDLs for the OMOP Common Data Model (CDM)

updated at Nov. 17, 2024, 9:02 a.m.

124 +0

896 +5

451 +0

BioGPT by Microsoft

None

updated at Nov. 16, 2024, 11:59 a.m.

71 +0

4,307 +6

452 +0

HumanDiseaseOntology by DiseaseOntology

Repository for the Human Disease Ontology.

updated at Nov. 15, 2024, 4:46 p.m.

21 +0

347 +0

108 -1

clinicalBERT by EmilyAlsentzer

repository for Publicly Available Clinical BERT Embeddings

updated at Nov. 15, 2024, 6:14 a.m.

25 +0

674 +1

135 +0

scispacy by allenai

A full spaCy pipeline and models for scientific/biomedical documents.

updated at Nov. 14, 2024, 5:08 p.m.

52 +0

1,709 +2

228 -1

biopython by biopython

Official git repository for Biopython (originally converted from CVS)

updated at Nov. 14, 2024, 3:58 p.m.

168 -1

4,392 +7

1,759 +2

biobert-pretrained by naver

BioBERT: a pre-trained biomedical language representation model for biomedical text mining

updated at Nov. 13, 2024, 1:39 a.m.

26 +0

667 +1

88 +0

biolink-model by biolink

Schema and generated objects for biolink data model and upper ontology

updated at Nov. 12, 2024, 2:18 p.m.

26 +0

177 +1

73 +1

brat by nlplab

brat rapid annotation tool (brat) - for all your textual annotation needs

updated at Nov. 11, 2024, 7:44 p.m.

80 +0

1,824 +1

509 +0

clinicalBERT by kexinhuang12345

ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)

updated at Nov. 11, 2024, 6:21 p.m.

14 +0

381 +1

98 +1

MedTator by OHNLP

A Serverless Text Annotation Tool for Corpus Development

updated at Nov. 7, 2024, 12:50 p.m.

4 +0

54 +0

20 +0

med7 by kormilitzin

None

updated at Nov. 3, 2024, 11:05 p.m.

13 +0

205 +0

26 +1

cord19 by allenai

Get started with CORD-19

updated at Nov. 3, 2024, 12:19 p.m.

13 +0

162 +0

20 +0

bluebert by ncbi-nlp

BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).

updated at Oct. 28, 2024, 12:03 p.m.

23 +0

558 +0

78 +0

ctakes by apache

Apache cTAKES is a Natural Language Processing (NLP) platform for clinical text.

updated at Oct. 27, 2024, 12:42 p.m.

12 +0

50 +0

12 +1

CRAFT by UCDenver-ccp

None

updated at Oct. 18, 2024, 2:03 a.m.

12 +0

70 +0

15 +0

rentrez by ropensci

talk with NCBI entrez using R

updated at Oct. 17, 2024, 3:37 p.m.

14 +0

196 +0

38 +0