scispacy by allenai

A full spaCy pipeline and models for scientific/biomedical documents.

updated at June 2, 2024, 7:55 p.m.

52 +0

1,625 +4

221 +0

ctakes by apache

Apache cTAKES is a Natural Language Processing (NLP) platform for clinical text.

updated at June 2, 2024, 4:52 p.m.

12 +0

37 +1

9 +0

biopython by biopython

Official git repository for Biopython (originally converted from CVS)

updated at June 2, 2024, 4:37 p.m.

168 +0

4,207 +9

1,724 +0

brat by nlplab

brat rapid annotation tool (brat) - for all your textual annotation needs

updated at June 2, 2024, 1:48 p.m.

80 +0

1,781 +0

510 +0

BioGPT by Microsoft

None

updated at June 2, 2024, 11:47 a.m.

70 +0

4,243 +1

438 +2

mimic-code by MIT-LCP

MIMIC Code Repository: Code shared by the research community for the MIMIC family of databases

updated at June 1, 2024, 2:21 p.m.

135 +0

2,369 +10

1,486 +1

biobert by dmis-lab

Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining

updated at June 1, 2024, 1:51 p.m.

63 +0

1,861 +8

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biobert-pretrained by naver

BioBERT: a pre-trained biomedical language representation model for biomedical text mining

updated at June 1, 2024, 1:20 p.m.

26 +0

634 +1

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HumanDiseaseOntology by DiseaseOntology

Repository for the Human Disease Ontology.

updated at June 1, 2024, 9:39 a.m.

20 +0

328 +2

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clinicalBERT by kexinhuang12345

ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)

updated at May 31, 2024, 8:13 p.m.

14 +0

353 +1

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scibert by allenai

A BERT model for scientific text.

updated at May 31, 2024, 1:57 p.m.

49 +0

1,448 +1

214 +1

biolink-model by biolink

Schema and generated objects for biolink data model and upper ontology

updated at May 29, 2024, 10:48 p.m.

23 +0

168 +1

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CommonDataModel by OHDSI

Definition and DDLs for the OMOP Common Data Model (CDM)

updated at May 29, 2024, 7:23 p.m.

124 +0

843 +2

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rentrez by ropensci

talk with NCBI entrez using R

updated at May 29, 2024, 10:17 a.m.

14 +0

191 +1

40 +0

MedTator by OHNLP

A Serverless Text Annotation Tool for Corpus Development

updated at May 28, 2024, 12:21 p.m.

4 +0

47 +1

15 +0

cord19 by allenai

Get started with CORD-19

updated at May 28, 2024, 9:24 a.m.

13 +0

152 +2

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clinicalBERT by EmilyAlsentzer

repository for Publicly Available Clinical BERT Embeddings

updated at May 27, 2024, 4:38 p.m.

25 +0

632 +1

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CogStack-SemEHR by CogStack

Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research

updated at May 22, 2024, 9:06 a.m.

25 +0

87 +0

19 +0

med7 by kormilitzin

None

updated at May 10, 2024, 8:37 p.m.

14 +0

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25 +0

bluebert by ncbi-nlp

BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).

updated at May 8, 2024, 3:57 p.m.

23 +0

538 +0

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