BioGPT by Microsoft

None

created at Aug. 15, 2022, 5:55 a.m.

70 +0

4,233 +2

435 +2

MedTator by OHNLP

A Serverless Text Annotation Tool for Corpus Development

created at Aug. 13, 2021, 7:08 p.m.

4 +0

46 +0

15 -1

cord19 by allenai

Get started with CORD-19

created at April 27, 2020, 1:48 a.m.

13 +0

149 +0

21 +0

med7 by kormilitzin

None

created at Feb. 26, 2020, 11:03 p.m.

14 +0

196 +0

25 +0

bluebert by ncbi-nlp

BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).

created at June 6, 2019, 2:02 p.m.

23 +0

537 +0

76 +0

clinicalBERT by EmilyAlsentzer

repository for Publicly Available Clinical BERT Embeddings

created at April 5, 2019, 8:50 p.m.

25 +0

630 +0

126 +0

clinicalBERT by kexinhuang12345

ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)

created at March 30, 2019, 8:06 a.m.

15 +0

348 +0

91 +0

BioWordVec by ncbi-nlp

None

created at Feb. 22, 2019, 4:32 p.m.

11 +0

139 +1

29 +0

scibert by allenai

A BERT model for scientific text.

created at Jan. 30, 2019, 7 p.m.

50 +0

1,438 +6

211 +0

biobert-pretrained by naver

BioBERT: a pre-trained biomedical language representation model for biomedical text mining

created at Jan. 28, 2019, 2:05 a.m.

26 +0

631 +1

85 +0

biobert by dmis-lab

Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining

created at Jan. 24, 2019, 6:27 p.m.

62 +0

1,845 +3

439 +0

medaCy by NLPatVCU

Medical Text Mining and Information Extraction with spaCy

created at Sept. 28, 2018, 2:48 p.m.

26 +0

423 +2

91 -1

scispacy by allenai

A full spaCy pipeline and models for scientific/biomedical documents.

created at Sept. 24, 2018, 9:45 p.m.

52 -1

1,617 +2

221 +0

CRAFT by UCDenver-ccp

None

created at April 30, 2018, 10:17 p.m.

12 +0

67 +1

15 +0

biolink-model by biolink

Schema and generated objects for biolink data model and upper ontology

created at Dec. 4, 2017, 4:45 a.m.

23 +0

167 +2

71 +0

DeepPhe-Release by DeepPhe

Public release of the DeepPhe analytic software

created at Oct. 2, 2017, 4:27 p.m.

12 +0

29 +0

10 +0

pubrunner by jakelever

A framework for keeping biomedical text mining result up-to-date

created at Aug. 30, 2017, 9:30 p.m.

7 +0

41 +0

6 +0

CogStack-SemEHR by CogStack

Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research

created at Oct. 14, 2016, 10:21 a.m.

25 +0

86 +0

19 +0

TabInOut by nikolamilosevic86

Framework for information extraction from tables

created at April 7, 2016, 3:41 p.m.

5 +0

41 +0

10 +0

Bio-SCoRes by kilicogluh

A smorgasbord architecture for coreference resolution in biomedical text

created at Feb. 12, 2016, 6:57 p.m.

6 +0

9 +0

1 +0