TabInOut by nikolamilosevic86

Framework for information extraction from tables

updated at July 3, 2023, 7:18 p.m.

5 +0

41 +0

10 +0

anafora by weitechen

Anafora is a web-based raw text annotation tool

updated at Feb. 11, 2024, 12:53 p.m.

22 +0

238 +0

55 +0

pubrunner by jakelever

A framework for keeping biomedical text mining result up-to-date

updated at Feb. 26, 2024, 4:56 p.m.

7 +0

41 +0

6 +0

CogStack-SemEHR by CogStack

Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research

updated at March 1, 2024, 10:58 a.m.

25 +0

86 +0

19 +0

Bio-SCoRes by kilicogluh

A smorgasbord architecture for coreference resolution in biomedical text

updated at March 12, 2024, 12:40 p.m.

6 +0

9 +0

1 +0

MedTator by OHNLP

A Serverless Text Annotation Tool for Corpus Development

updated at April 16, 2024, 5:19 p.m.

4 +0

46 +0

15 +0

clinicalBERT by kexinhuang12345

ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)

updated at April 19, 2024, 8:01 p.m.

15 +0

348 +0

91 +0

DeepPhe-Release by DeepPhe

Public release of the DeepPhe analytic software

updated at April 25, 2024, 12:09 p.m.

12 +0

29 +0

10 +0

cord19 by allenai

Get started with CORD-19

updated at April 27, 2024, 5:48 p.m.

13 +0

149 +0

21 +0

rentrez by ropensci

talk with NCBI entrez using R

updated at May 1, 2024, 3:50 p.m.

14 +0

190 +0

40 +0

CRAFT by UCDenver-ccp

None

updated at May 3, 2024, 3:08 p.m.

12 +0

67 +0

15 +0

medaCy by NLPatVCU

Medical Text Mining and Information Extraction with spaCy

updated at May 3, 2024, 6:47 p.m.

26 +0

423 +0

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ctakes by apache

Apache cTAKES is a Natural Language Processing (NLP) platform for clinical text.

updated at May 6, 2024, 12:51 a.m.

12 +0

35 -1

9 +0

BioWordVec by ncbi-nlp

None

updated at May 6, 2024, 12:52 a.m.

11 +0

138 -1

29 +0

scispacy by allenai

A full spaCy pipeline and models for scientific/biomedical documents.

updated at May 7, 2024, 10:03 a.m.

52 +0

1,617 +0

220 -1

HumanDiseaseOntology by DiseaseOntology

Repository for the Human Disease Ontology.

updated at May 7, 2024, 6:40 p.m.

20 +0

323 +0

109 +1

biobert-pretrained by naver

BioBERT: a pre-trained biomedical language representation model for biomedical text mining

updated at May 8, 2024, 1:42 a.m.

26 +0

632 +1

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brat by nlplab

brat rapid annotation tool (brat) - for all your textual annotation needs

updated at May 8, 2024, 12:29 p.m.

80 +0

1,779 +3

510 +0

bluebert by ncbi-nlp

BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).

updated at May 8, 2024, 3:57 p.m.

23 +0

538 +1

76 +0

biobert by dmis-lab

Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining

updated at May 9, 2024, 5:28 a.m.

61 -1

1,847 +2

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