scibert by allenai

A BERT model for scientific text.

updated at May 11, 2024, 3:34 p.m.

49 -1

1,440 +2

212 +1

biolink-model by biolink

Schema and generated objects for biolink data model and upper ontology

updated at May 10, 2024, 11:04 p.m.

23 +0

167 +0

71 +0

med7 by kormilitzin

None

updated at May 10, 2024, 8:37 p.m.

14 +0

197 +1

25 +0

mimic-code by MIT-LCP

MIMIC Code Repository: Code shared by the research community for the MIMIC family of databases

updated at May 10, 2024, 4:28 p.m.

135 +0

2,333 +6

1,485 +4

biopython by biopython

Official git repository for Biopython (originally converted from CVS)

updated at May 10, 2024, 3:23 p.m.

168 +0

4,181 +6

1,717 +3

BioGPT by Microsoft

None

updated at May 10, 2024, 10:46 a.m.

70 +0

4,233 +0

435 +0

clinicalBERT by EmilyAlsentzer

repository for Publicly Available Clinical BERT Embeddings

updated at May 10, 2024, 2:24 a.m.

25 +0

631 +1

126 +0

CommonDataModel by OHDSI

Definition and DDLs for the OMOP Common Data Model (CDM)

updated at May 9, 2024, 6:54 a.m.

124 +0

835 +3

438 +1

biobert by dmis-lab

Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining

updated at May 9, 2024, 5:28 a.m.

61 -1

1,847 +2

441 +2

bluebert by ncbi-nlp

BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).

updated at May 8, 2024, 3:57 p.m.

23 +0

538 +1

76 +0

brat by nlplab

brat rapid annotation tool (brat) - for all your textual annotation needs

updated at May 8, 2024, 12:29 p.m.

80 +0

1,779 +3

510 +0

biobert-pretrained by naver

BioBERT: a pre-trained biomedical language representation model for biomedical text mining

updated at May 8, 2024, 1:42 a.m.

26 +0

632 +1

85 +0

HumanDiseaseOntology by DiseaseOntology

Repository for the Human Disease Ontology.

updated at May 7, 2024, 6:40 p.m.

20 +0

323 +0

109 +1

scispacy by allenai

A full spaCy pipeline and models for scientific/biomedical documents.

updated at May 7, 2024, 10:03 a.m.

52 +0

1,617 +0

220 -1

BioWordVec by ncbi-nlp

None

updated at May 6, 2024, 12:52 a.m.

11 +0

138 -1

29 +0

ctakes by apache

Apache cTAKES is a Natural Language Processing (NLP) platform for clinical text.

updated at May 6, 2024, 12:51 a.m.

12 +0

35 -1

9 +0

medaCy by NLPatVCU

Medical Text Mining and Information Extraction with spaCy

updated at May 3, 2024, 6:47 p.m.

26 +0

423 +0

91 +0

CRAFT by UCDenver-ccp

None

updated at May 3, 2024, 3:08 p.m.

12 +0

67 +0

15 +0

rentrez by ropensci

talk with NCBI entrez using R

updated at May 1, 2024, 3:50 p.m.

14 +0

190 +0

40 +0

cord19 by allenai

Get started with CORD-19

updated at April 27, 2024, 5:48 p.m.

13 +0

149 +0

21 +0