biocaml by biocaml

OCaml Bioinformatics Library

updated at April 11, 2024, 5:57 a.m.

15 +0

121 +0

21 +0

samstat by TimoLassmann

SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.

updated at April 12, 2024, 3:15 a.m.

3 +0

23 +0

6 +0

BigDataScript by pcingola

BigDataScript: Scirpting language for big data

updated at April 17, 2024, 11:09 a.m.

13 +0

93 +0

21 +0

ggd-cli by gogetdata

The command-line interface to GGD

updated at April 17, 2024, 12:59 p.m.

5 +0

42 +0

3 +0

cruzdb by brentp

python access to UCSC genomes database

updated at April 23, 2024, 8:01 p.m.

17 +0

134 +0

42 +0

biojs by biojs

🔬A library of JavaScript components to represent biological data

updated at April 26, 2024, 1:11 a.m.

70 +0

484 +0

121 +0

Circleator by jonathancrabtree

Flexible circular visualization of genome-associated data with BioPerl and SVG.

updated at April 27, 2024, 3:44 p.m.

5 +0

46 +0

8 +0

poapy by ljdursi

A simple Partial Order Aligner based on Lee, Grasso and Sharlow (2002), for education/demonstration purposes

updated at April 29, 2024, 5:18 p.m.

8 +0

69 +0

12 +0

circos by vigsterkr

Circos is a software package for visualizing data and information. It visualizes data in a circular layout — this makes Circos ideal for exploring relationships between objects or positions.

updated at April 30, 2024, 8:57 a.m.

9 +0

69 +0

32 +0

bedtools by arq5x

A powerful toolset for genome arithmetic.

updated at May 1, 2024, 8:58 a.m.

20 +0

140 +0

86 +0

pileup.js by hammerlab

Interactive in-browser track viewer

updated at May 1, 2024, 2:22 p.m.

20 +0

273 +0

64 -2

wormtable by wormtable

Write-once-read-many table for large datasets.

updated at May 1, 2024, 10:03 p.m.

6 +0

28 +0

5 +0

fastx_toolkit by agordon

FASTA/FASTQ pre-processing programs

updated at May 2, 2024, 2:09 p.m.

18 +0

157 +0

60 +0

somalier by brentp

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

updated at May 2, 2024, 2:45 p.m.

10 -1

254 +0

35 +0

GLnexus by dnanexus-rnd

Scalable gVCF merging and joint variant calling for population sequencing projects

updated at May 5, 2024, 5:51 a.m.

15 +0

135 +0

35 +0

SKESA by ncbi

SKESA assembler

updated at May 9, 2024, 5:03 a.m.

17 +0

105 +0

16 +0

lumpy-sv by arq5x

lumpy: a general probabilistic framework for structural variant discovery

updated at May 9, 2024, 9:40 p.m.

27 +0

301 +0

118 -1

telseq by zd1

A software for calculating telomere length

updated at May 11, 2024, 7:13 a.m.

9 +0

64 +0

26 +0

RSEM by deweylab

RSEM: accurate quantification of gene and isoform expression from RNA-Seq data

updated at May 16, 2024, 9:06 a.m.

22 +0

399 +0

118 +0

bamtools by pezmaster31

C++ API & command-line toolkit for working with BAM data

updated at May 18, 2024, 9:46 a.m.

27 +0

410 +0

153 +0