biojs by biojs

🔬A library of JavaScript components to represent biological data

created at Aug. 2, 2013, 3:05 p.m.

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pyfaidx by mdshw5

Efficient pythonic random access to fasta subsequences

created at Sept. 12, 2013, 7:02 p.m.

9 +0

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Circleator by jonathancrabtree

Flexible circular visualization of genome-associated data with BioPerl and SVG.

created at Sept. 13, 2013, 8:19 p.m.

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fastqp by mdshw5

Simple FASTQ quality assessment using Python

created at Sept. 23, 2013, 8:01 p.m.

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oneliners by stephenturner

Useful bash one-liners for bioinformatics.

created at Oct. 19, 2013, 11:33 a.m.

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islandplot by lairdm

SVG based genome viewer written in javascript using D3

created at Nov. 6, 2013, 10:22 p.m.

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fastx_toolkit by agordon

FASTA/FASTQ pre-processing programs

created at Nov. 8, 2013, 1:03 p.m.

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delly by dellytools

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

created at Nov. 15, 2013, 8:51 a.m.

33 +0

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bedtools2 by arq5x

bedtools - the swiss army knife for genome arithmetic

created at Dec. 9, 2013, 9:18 p.m.

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dnaism by drio

Horizon chart js library for DNA data.

created at Jan. 6, 2014, 4:33 p.m.

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sift by teamdfir

SIFT

created at Jan. 18, 2014, 7:20 p.m.

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bionode by bionode

Modular and universal bioinformatics

created at Jan. 23, 2014, 11:56 p.m.

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SnpEff by pcingola

None

created at Jan. 31, 2014, 10:22 p.m.

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pysam by pysam-developers

Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.

created at Feb. 5, 2014, 8:38 p.m.

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prokka by tseemann

Rapid prokaryotic genome annotation

created at March 26, 2014, 7:19 a.m.

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pyensembl by openvax

Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl

created at April 14, 2014, 3:23 p.m.

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smof by incertae-sedis

Explore and analyze biological sequence data

created at April 27, 2014, 12:34 p.m.

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awesome-pipeline by pditommaso

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

created at July 19, 2014, 3:48 p.m.

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cufflinks by cole-trapnell-lab

None

created at July 25, 2014, 10:42 p.m.

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rnaseq_tutorial by griffithlab

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

created at July 31, 2014, 6:58 p.m.

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