prokka by tseemann

Rapid prokaryotic genome annotation

updated at May 25, 2024, 10:03 p.m.

45 +0

766 +6

218 +0

WFA2-lib by smarco

WFA-lib: Wavefront alignment algorithm library v2

updated at May 25, 2024, 8:53 p.m.

14 +0

150 +1

32 +2

biopython by biopython

Official git repository for Biopython (originally converted from CVS)

updated at May 25, 2024, 8:29 p.m.

168 +0

4,198 +7

1,724 +1

bioSyntax by bioSyntax

Syntax highlighting for computational biology

updated at May 25, 2024, 6:55 p.m.

17 +0

248 +1

30 +0

csvkit by wireservice

A suite of utilities for converting to and working with CSV, the king of tabular file formats.

updated at May 25, 2024, 6:37 p.m.

128 +0

5,847 +5

605 +2

awesome-pipeline by pditommaso

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

updated at May 25, 2024, 6 p.m.

235 +0

5,960 +13

616 +0

bioinformatics by ossu

Path to a free self-taught education in Bioinformatics!

updated at May 25, 2024, 5:36 p.m.

362 +1

5,123 +50

859 +1

spades by ablab

SPAdes Genome Assembler

updated at May 25, 2024, 3:26 p.m.

32 +0

683 +6

130 -1

MultiQC by MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

updated at May 25, 2024, 3:25 p.m.

37 +0

1,178 +1

581 +0

cyvcf2 by brentp

cython + htslib == fast VCF and BCF processing

updated at May 25, 2024, 2:29 p.m.

7 +0

359 +1

71 +0

csvtk by shenwei356

A cross-platform, efficient and practical CSV/TSV toolkit in Golang

updated at May 25, 2024, 1:01 p.m.

25 +0

966 +3

84 +0

cromwell by broadinstitute

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

updated at May 25, 2024, 9:18 a.m.

112 +0

962 +1

351 +1

pysam by pysam-developers

Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.

updated at May 25, 2024, 8:57 a.m.

48 +0

754 +2

271 +0

diamond by bbuchfink

Accelerated BLAST compatible local sequence aligner.

updated at May 25, 2024, 6:46 a.m.

36 +0

972 +6

173 +1

awesome-AI-based-protein-design by opendilab

A collection of research papers for AI-based protein design

updated at May 25, 2024, 2:13 a.m.

2 +0

190 +3

12 +0

igv by igvteam

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

updated at May 24, 2024, 9:47 p.m.

50 +0

614 +1

377 +0

hail by hail-is

Cloud-native genomic dataframes and batch computing

updated at May 24, 2024, 7:38 p.m.

55 +0

943 +2

238 +2

rust-bio by rust-bio

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

updated at May 24, 2024, 4:49 p.m.

70 +0

1,525 +6

200 +0

bcftools by samtools

This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

updated at May 24, 2024, 4:33 p.m.

49 +0

623 +1

241 +1

seqtk by lh3

Toolkit for processing sequences in FASTA/Q formats

updated at May 24, 2024, 3:47 p.m.

62 +0

1,324 +5

309 +1