rnaseq_tutorial by griffithlab

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

updated at May 21, 2024, 9:40 a.m.

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scipipe by scipipe

Robust, flexible and resource-efficient pipelines using Go and the commandline

updated at May 20, 2024, 7:50 p.m.

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oneliners by stephenturner

Useful bash one-liners for bioinformatics.

updated at May 20, 2024, 4:40 a.m.

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parasail by jeffdaily

Pairwise Sequence Alignment Library

updated at May 19, 2024, 11:14 a.m.

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bamtools by pezmaster31

C++ API & command-line toolkit for working with BAM data

updated at May 18, 2024, 9:46 a.m.

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octopus by luntergroup

Bayesian haplotype-based mutation calling

updated at May 17, 2024, 11:29 p.m.

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bioservices by cokelaer

Access to Biological Web Services from Python.

updated at May 17, 2024, 9:55 p.m.

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SnpEff by pcingola

None

updated at May 17, 2024, 7:02 a.m.

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redun by insitro

Yet another redundant workflow engine

updated at May 17, 2024, 3:09 a.m.

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RSEM by deweylab

RSEM: accurate quantification of gene and isoform expression from RNA-Seq data

updated at May 16, 2024, 9:06 a.m.

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sift by teamdfir

SIFT

updated at May 16, 2024, 7:12 a.m.

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pyfaidx by mdshw5

Efficient pythonic random access to fasta subsequences

updated at May 13, 2024, 2:09 p.m.

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mummer by mummer4

Mummer alignment tool

updated at May 13, 2024, 7:30 a.m.

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cufflinks by cole-trapnell-lab

None

updated at May 12, 2024, 12:55 p.m.

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telseq by zd1

A software for calculating telomere length

updated at May 11, 2024, 7:13 a.m.

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lumpy-sv by arq5x

lumpy: a general probabilistic framework for structural variant discovery

updated at May 9, 2024, 9:40 p.m.

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PyVCF by jamescasbon

A Variant Call Format reader for Python.

updated at May 9, 2024, 10:25 a.m.

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SKESA by ncbi

SKESA assembler

updated at May 9, 2024, 5:03 a.m.

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seqan3 by seqan

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

updated at May 7, 2024, 9:11 a.m.

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GLnexus by dnanexus-rnd

Scalable gVCF merging and joint variant calling for population sequencing projects

updated at May 5, 2024, 5:51 a.m.

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