mergesam by DarwinAwardWinner

Automate common sam & bam conversions

updated at Jan. 6, 2016, 2:02 a.m.

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bam-toolbox by AndersenLab

A bam toolbox

updated at March 4, 2020, 12:06 a.m.

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PHAT by chgibb

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

updated at Nov. 24, 2021, 5 p.m.

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islandplot by lairdm

SVG based genome viewer written in javascript using D3

updated at Sept. 1, 2022, 1:22 a.m.

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dnaism by drio

Horizon chart js library for DNA data.

updated at Oct. 7, 2022, 8:30 p.m.

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gsort by brentp

sort genomic data

updated at June 16, 2023, 4:13 p.m.

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r-peridot by pentalpha

Software for intuitively doing Differential Gene Expression (DGE) analysis on Windows and GNU\Linux, based on R packages.

updated at Aug. 3, 2023, 1:40 p.m.

2 +0

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Scribl by chmille4

HTML5 canvas genomic graphics library

updated at Oct. 30, 2023, 1:42 p.m.

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ruffus by cgat-developers

CGAT-ruffus is a lightweight python module for running computational pipelines

updated at Dec. 15, 2023, 2:59 a.m.

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grabix by arq5x

a wee tool for random access into BGZF files.

updated at Dec. 26, 2023, 1:21 a.m.

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cyvcf by arq5x

A fast Python library for VCF files leveraging Cython for speed.

updated at Jan. 22, 2024, 10:32 a.m.

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wdl by broadinstitute

Workflow Description Language - Specification and Implementations

updated at Jan. 25, 2024, 7:02 a.m.

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gatk by broadgsa

Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk repository

updated at Feb. 20, 2024, 7:20 a.m.

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bioservices by cokelaer

Access to Biological Web Services from Python.

updated at March 4, 2024, 8 p.m.

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dalliance by dasmoth

Interactive web-based genome browser.

updated at March 7, 2024, 6:20 p.m.

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jbrowse by GMOD

JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.

updated at March 13, 2024, 1:18 a.m.

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bpipe by ssadedin

Bpipe - a tool for running and managing bioinformatics pipelines

updated at March 13, 2024, 5:30 a.m.

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easy_qsub by shenwei356

Easily submitting multiple PBS jobs or running local jobs in parallel. Multiple input files supported.

updated at March 13, 2024, 5:58 a.m.

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smof by incertae-sedis

Explore and analyze biological sequence data

updated at March 17, 2024, 5:55 p.m.

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circos by vigsterkr

Circos is a software package for visualizing data and information. It visualizes data in a circular layout — this makes Circos ideal for exploring relationships between objects or positions.

updated at March 20, 2024, 3:37 p.m.

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