cruzdb by brentp

python access to UCSC genomes database

updated at April 23, 2024, 8:01 p.m.

17 +0

134 +0

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cufflinks by cole-trapnell-lab

None

updated at April 25, 2024, 3:01 p.m.

36 +0

301 +0

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biojs by biojs

🔬A library of JavaScript components to represent biological data

updated at April 26, 2024, 1:11 a.m.

70 +0

484 +0

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Circleator by jonathancrabtree

Flexible circular visualization of genome-associated data with BioPerl and SVG.

updated at April 27, 2024, 3:44 p.m.

5 +0

46 +0

8 +0

bioSyntax by bioSyntax

Syntax highlighting for computational biology

updated at April 27, 2024, 3:49 p.m.

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247 +0

30 +0

fujiplot by mkanai

Fuji plot—a circos representation of multiple GWAS results—

updated at April 28, 2024, 1:50 a.m.

3 +0

66 +0

19 +0

genozip by divonlan

A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too

updated at April 28, 2024, 2:04 p.m.

1 +0

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bioservices by cokelaer

Access to Biological Web Services from Python.

updated at April 28, 2024, 7:28 p.m.

18 +0

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zindex by mattgodbolt

Create an index on a compressed text file

updated at April 28, 2024, 11:13 p.m.

23 +0

613 +0

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pyensembl by openvax

Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl

updated at April 29, 2024, 12:48 a.m.

22 +0

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66 +0

SnpEff by pcingola

None

updated at April 29, 2024, 3:56 p.m.

25 +0

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74 +0

poapy by ljdursi

A simple Partial Order Aligner based on Lee, Grasso and Sharlow (2002), for education/demonstration purposes

updated at April 29, 2024, 5:18 p.m.

8 +0

69 +0

12 +0

seqfu2 by telatin

seqfu - Sequece Fastx Utilities

updated at April 30, 2024, 1:05 a.m.

3 +0

102 +0

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circos by vigsterkr

Circos is a software package for visualizing data and information. It visualizes data in a circular layout — this makes Circos ideal for exploring relationships between objects or positions.

updated at April 30, 2024, 8:57 a.m.

9 +0

69 +0

32 +0

bwa by lh3

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

updated at April 30, 2024, 10:02 p.m.

107 +0

1,454 +0

544 +0

smoove by brentp

structural variant calling and genotyping with existing tools, but, smoothly.

updated at May 1, 2024, 8:01 a.m.

10 +0

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bedtools by arq5x

A powerful toolset for genome arithmetic.

updated at May 1, 2024, 8:58 a.m.

20 +0

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pileup.js by hammerlab

Interactive in-browser track viewer

updated at May 1, 2024, 2:22 p.m.

20 +0

273 +0

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sra-explorer by ewels

Web application to explore the Sequence Read Archive.

updated at May 1, 2024, 9:15 p.m.

9 +0

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wormtable by wormtable

Write-once-read-many table for large datasets.

updated at May 1, 2024, 10:03 p.m.

6 +0

28 +0

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