AGAT by NBISweden

Another Gtf/Gff Analysis Toolkit

updated at May 8, 2024, 6:40 a.m.

46 +0

411 +1

52 +0

RNA-seq-analysis by crazyhottommy

RNAseq analysis notes from Ming Tang

updated at May 8, 2024, 8:01 a.m.

78 +0

840 +1

290 +0

bcbio-nextgen by bcbio

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

updated at May 8, 2024, 8:44 a.m.

87 +0

975 +1

357 +0

MMseqs2 by soedinglab

MMseqs2: ultra fast and sensitive search and clustering suite

updated at May 8, 2024, 11:18 a.m.

31 +0

1,265 +4

179 +0

ChIP-seq-analysis by crazyhottommy

ChIP-seq analysis notes from Ming Tang

updated at May 8, 2024, 12:54 p.m.

65 +0

709 +1

290 +0

canu by marbl

A single molecule sequence assembler for genomes large and small.

updated at May 8, 2024, 2:52 p.m.

54 +0

632 +1

177 +0

WFA2-lib by smarco

WFA-lib: Wavefront alignment algorithm library v2

updated at May 8, 2024, 9:28 p.m.

14 +1

147 +5

29 +0

SKESA by ncbi

SKESA assembler

updated at May 9, 2024, 5:03 a.m.

17 +0

105 +1

16 +0

PyVCF by jamescasbon

A Variant Call Format reader for Python.

updated at May 9, 2024, 10:25 a.m.

31 +0

393 +1

199 +0

prokka by tseemann

Rapid prokaryotic genome annotation

updated at May 9, 2024, 11:27 a.m.

44 +0

760 +2

217 +1

bowtie2 by BenLangmead

A fast and sensitive gapped read aligner

updated at May 9, 2024, 3:56 p.m.

30 +0

622 +1

162 +0

pyfaidx by mdshw5

Efficient pythonic random access to fasta subsequences

updated at May 9, 2024, 8:13 p.m.

9 +0

441 +1

73 +0

lumpy-sv by arq5x

lumpy: a general probabilistic framework for structural variant discovery

updated at May 9, 2024, 9:40 p.m.

27 +0

301 +2

119 +1

wtdbg2 by ruanjue

Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly

updated at May 10, 2024, 6:12 a.m.

31 +0

493 +0

89 +0

csvkit by wireservice

A suite of utilities for converting to and working with CSV, the king of tabular file formats.

updated at May 10, 2024, 8:16 a.m.

128 +0

5,833 +10

603 +0

delly by dellytools

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

updated at May 10, 2024, 8:20 a.m.

34 +0

403 +2

136 +0

igv by igvteam

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

updated at May 10, 2024, 9:36 a.m.

50 +0

611 +1

377 +0

seqtk by lh3

Toolkit for processing sequences in FASTA/Q formats

updated at May 10, 2024, 10:30 a.m.

62 +0

1,316 +3

308 +0

awesome-AI-based-protein-design by opendilab

A collection of research papers for AI-based protein design

updated at May 10, 2024, 12:39 p.m.

2 +0

185 +2

12 +1

biopython by biopython

Official git repository for Biopython (originally converted from CVS)

updated at May 10, 2024, 3:23 p.m.

168 +0

4,181 +6

1,717 +3