bakta by oschwengers

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

updated at April 28, 2024, 8:05 a.m.

14 +0

391 +5

42 +0

ChIP-seq-analysis by crazyhottommy

ChIP-seq analysis notes from Ming Tang

updated at April 28, 2024, 6 a.m.

65 +0

708 +6

290 +2

freebayes by freebayes

Bayesian haplotype-based genetic polymorphism discovery and genotyping.

updated at April 28, 2024, 5:53 a.m.

46 +0

746 +2

259 +0

nextflow by nextflow-io

A DSL for data-driven computational pipelines

updated at April 28, 2024, 4:39 a.m.

86 +0

2,540 +1

590 +2

canu by marbl

A single molecule sequence assembler for genomes large and small.

updated at April 28, 2024, 3:15 a.m.

54 +0

630 +1

177 +0

MultiQC by MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

updated at April 28, 2024, 2:33 a.m.

36 +0

1,167 +4

579 +1

csvkit by wireservice

A suite of utilities for converting to and working with CSV, the king of tabular file formats.

updated at April 28, 2024, 2:07 a.m.

130 -1

5,817 +5

601 +1

fujiplot by mkanai

Fuji plot—a circos representation of multiple GWAS results—

updated at April 28, 2024, 1:50 a.m.

3 +0

66 +1

19 +0

MMseqs2 by soedinglab

MMseqs2: ultra fast and sensitive search and clustering suite

updated at April 27, 2024, 6:14 p.m.

31 +0

1,256 +9

179 +0

bcftools by samtools

This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

updated at April 27, 2024, 5:53 p.m.

48 +0

620 +1

237 +1

bioinformatics by ossu

Path to a free self-taught education in Bioinformatics!

updated at April 27, 2024, 4:14 p.m.

358 +1

5,019 +18

848 +6

bedtools2 by arq5x

bedtools - the swiss army knife for genome arithmetic

updated at April 27, 2024, 4:12 p.m.

58 +0

898 +0

283 +1

bioSyntax by bioSyntax

Syntax highlighting for computational biology

updated at April 27, 2024, 3:49 p.m.

17 +0

247 +2

30 +0

Circleator by jonathancrabtree

Flexible circular visualization of genome-associated data with BioPerl and SVG.

updated at April 27, 2024, 3:44 p.m.

5 +0

46 +1

8 +0

pileup.js by hammerlab

Interactive in-browser track viewer

updated at April 27, 2024, 3:41 p.m.

20 +0

272 +1

66 +0

GLnexus by dnanexus-rnd

Scalable gVCF merging and joint variant calling for population sequencing projects

updated at April 27, 2024, 2:06 p.m.

15 +0

133 +1

35 +0

rust-bio by rust-bio

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

updated at April 27, 2024, 1:29 p.m.

70 +0

1,507 +11

199 +2

hifiasm by chhylp123

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

updated at April 27, 2024, 11:59 a.m.

29 +0

472 +0

77 +0

awesome-pipeline by pditommaso

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

updated at April 27, 2024, 11:25 a.m.

234 +0

5,912 +8

616 +1

RNA-seq-analysis by crazyhottommy

RNAseq analysis notes from Ming Tang

updated at April 27, 2024, 11:05 a.m.

78 +0

839 +4

290 +0