Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
created at Feb. 6, 2013, 11:14 a.m.
ChIP-seq analysis notes from Ming Tang
created at June 12, 2015, 9:42 p.m.
RNAseq analysis notes from Ming Tang
created at Aug. 26, 2015, 7:37 p.m.
Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")
created at May 14, 2010, 9:09 p.m.
Access to Biological Web Services from Python.
created at Aug. 28, 2014, 3:24 p.m.
tools for adding mutations to existing .bam files, used for testing mutation callers
created at May 10, 2012, 10:18 p.m.
Automate common sam & bam conversions
created at Aug. 26, 2011, 2:19 p.m.
Easily submitting multiple PBS jobs or running local jobs in parallel. Multiple input files supported.
created at March 9, 2015, 9:40 a.m.
A suite of utilities for converting to and working with CSV, the king of tabular file formats.
created at April 1, 2011, 3 a.m.