somalier by brentp

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

updated at May 2, 2024, 2:45 p.m.

11 +0

254 +0

35 +0

fastx_toolkit by agordon

FASTA/FASTQ pre-processing programs

updated at May 2, 2024, 2:09 p.m.

18 +0

157 +0

60 +0

gridss by PapenfussLab

GRIDSS: the Genomic Rearrangement IDentification Software Suite

updated at May 2, 2024, 1:11 a.m.

24 +0

244 +0

73 +0

wormtable by wormtable

Write-once-read-many table for large datasets.

updated at May 1, 2024, 10:03 p.m.

6 +0

28 +0

5 +0

sra-explorer by ewels

Web application to explore the Sequence Read Archive.

updated at May 1, 2024, 9:15 p.m.

9 +0

188 +0

27 +0

pileup.js by hammerlab

Interactive in-browser track viewer

updated at May 1, 2024, 2:22 p.m.

20 +0

273 +0

66 +0

bedtools by arq5x

A powerful toolset for genome arithmetic.

updated at May 1, 2024, 8:58 a.m.

20 +0

140 +0

87 +0

circos by vigsterkr

Circos is a software package for visualizing data and information. It visualizes data in a circular layout — this makes Circos ideal for exploring relationships between objects or positions.

updated at April 30, 2024, 8:57 a.m.

9 +0

69 +0

32 +0

seqfu2 by telatin

seqfu - Sequece Fastx Utilities

updated at April 30, 2024, 1:05 a.m.

3 +0

102 +0

6 +0

poapy by ljdursi

A simple Partial Order Aligner based on Lee, Grasso and Sharlow (2002), for education/demonstration purposes

updated at April 29, 2024, 5:18 p.m.

8 +0

69 +0

12 +0

fujiplot by mkanai

Fuji plot—a circos representation of multiple GWAS results—

updated at April 28, 2024, 1:50 a.m.

3 +0

66 +0

19 +0

Circleator by jonathancrabtree

Flexible circular visualization of genome-associated data with BioPerl and SVG.

updated at April 27, 2024, 3:44 p.m.

5 +0

46 +0

8 +0

biojs by biojs

🔬A library of JavaScript components to represent biological data

updated at April 26, 2024, 1:11 a.m.

70 +0

484 +0

121 +0

cruzdb by brentp

python access to UCSC genomes database

updated at April 23, 2024, 8:01 p.m.

17 +0

134 +0

42 +0

bionode by bionode

Modular and universal bioinformatics

updated at April 17, 2024, 1:03 p.m.

36 +0

308 +0

39 +0

ggd-cli by gogetdata

The command-line interface to GGD

updated at April 17, 2024, 12:59 p.m.

5 +0

42 +0

3 +0

BigDataScript by pcingola

BigDataScript: Scirpting language for big data

updated at April 17, 2024, 11:09 a.m.

13 +0

93 +0

21 +0

samstat by TimoLassmann

SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.

updated at April 12, 2024, 3:15 a.m.

3 +0

23 +0

7 +0

tabix by samtools

Note: tabix and bgzip binaries are now part of the HTSlib project.

updated at April 11, 2024, 6:37 a.m.

22 +0

91 +0

40 +0

biocaml by biocaml

OCaml Bioinformatics Library

updated at April 11, 2024, 5:57 a.m.

15 +0

121 +0

21 +0