nextflow by nextflow-io

A DSL for data-driven computational pipelines

updated at May 19, 2024, 10:43 a.m.

85 +0

2,564 +9

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MMseqs2 by soedinglab

MMseqs2: ultra fast and sensitive search and clustering suite

updated at May 19, 2024, 9:23 a.m.

31 +0

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seqtk by lh3

Toolkit for processing sequences in FASTA/Q formats

updated at May 19, 2024, 7:36 a.m.

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hail by hail-is

Cloud-native genomic dataframes and batch computing

updated at May 19, 2024, 5:57 a.m.

55 +0

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bioinformatics by ossu

Path to a free self-taught education in Bioinformatics!

updated at May 19, 2024, 5:49 a.m.

361 +2

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biopython by biopython

Official git repository for Biopython (originally converted from CVS)

updated at May 18, 2024, 8:28 p.m.

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poly by bebop

A Go package for engineering organisms.

updated at May 18, 2024, 4:43 p.m.

12 +0

654 +2

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csvkit by wireservice

A suite of utilities for converting to and working with CSV, the king of tabular file formats.

updated at May 18, 2024, 4:18 p.m.

128 +0

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MultiQC by MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

updated at May 18, 2024, 11:41 a.m.

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bamtools by pezmaster31

C++ API & command-line toolkit for working with BAM data

updated at May 18, 2024, 9:46 a.m.

27 +0

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csvtk by shenwei356

A cross-platform, efficient and practical CSV/TSV toolkit in Golang

updated at May 18, 2024, 2:36 a.m.

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octopus by luntergroup

Bayesian haplotype-based mutation calling

updated at May 17, 2024, 11:29 p.m.

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bioservices by cokelaer

Access to Biological Web Services from Python.

updated at May 17, 2024, 9:55 p.m.

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oneliners by stephenturner

Useful bash one-liners for bioinformatics.

updated at May 17, 2024, 8:33 p.m.

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seqkit by shenwei356

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

updated at May 17, 2024, 7:22 p.m.

27 +0

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awesome-pipeline by pditommaso

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

updated at May 17, 2024, 5:05 p.m.

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zindex by mattgodbolt

Create an index on a compressed text file

updated at May 17, 2024, 4:01 p.m.

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rust-bio by rust-bio

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

updated at May 17, 2024, 2:29 p.m.

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deepvariant by google

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

updated at May 17, 2024, 12:15 p.m.

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bakta by oschwengers

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

updated at May 17, 2024, 10:25 a.m.

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