Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")
created at May 14, 2010, 9:09 p.m.
A suite of utilities for converting to and working with CSV, the king of tabular file formats.
created at April 1, 2011, 3 a.m.
Automate common sam & bam conversions
created at Aug. 26, 2011, 2:19 p.m.
tools for adding mutations to existing .bam files, used for testing mutation callers
created at May 10, 2012, 10:18 p.m.
CGAT-ruffus is a lightweight python module for running computational pipelines
created at Jan. 6, 2013, 10:20 p.m.
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
created at Feb. 6, 2013, 11:14 a.m.
Explore and analyze biological sequence data
created at April 27, 2014, 12:34 p.m.
Access to Biological Web Services from Python.
created at Aug. 28, 2014, 3:24 p.m.
Easily submitting multiple PBS jobs or running local jobs in parallel. Multiple input files supported.
created at March 9, 2015, 9:40 a.m.