awesome-AI-based-protein-design by opendilab

A collection of research papers for AI-based protein design

created at Nov. 7, 2022, 10:08 a.m.

2 +0

182 +1

11 +0

redun by insitro

Yet another redundant workflow engine

created at Nov. 4, 2021, 12:14 a.m.

15 +0

486 +2

37 +0

WFA2-lib by smarco

WFA-lib: Wavefront alignment algorithm library v2

created at June 13, 2021, 1:32 p.m.

13 +0

142 +3

29 +0

seqfu2 by telatin

seqfu - Sequece Fastx Utilities

created at Nov. 26, 2020, 3:50 p.m.

3 +0

101 +0

6 +0

poly by bebop

A Go package for engineering organisms.

created at May 29, 2020, 9 p.m.

12 +0

649 +1

68 +0

bakta by oschwengers

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

created at Jan. 15, 2020, 11:08 p.m.

14 +0

391 +5

42 +0

genozip by divonlan

A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too

created at Dec. 15, 2019, 5:23 a.m.

1 +0

148 +0

10 +0

AGAT by NBISweden

Another Gtf/Gff Analysis Toolkit

created at Nov. 19, 2019, 9:35 a.m.

46 +0

409 +4

52 -1

bacannot by fmalmeida

Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.

created at Oct. 23, 2019, 5:51 p.m.

4 +0

94 +0

9 +0

ngs-preprocess by fmalmeida

A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies

created at Sept. 19, 2019, 7:01 p.m.

4 +0

28 +0

4 +0

hifiasm by chhylp123

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

created at May 9, 2019, 7:34 p.m.

29 +0

472 +0

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somalier by brentp

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

created at Aug. 7, 2018, 2:52 p.m.

11 +0

253 +0

35 +0

SKESA by ncbi

SKESA assembler

created at July 11, 2018, 8:13 p.m.

17 +1

104 +1

16 +0

squiggle by IQTLabs

📈 DNA Sequence Visualization for Humans

created at July 4, 2018, 3:47 a.m.

6 +0

38 +0

8 +0

awesome-alternative-splicing by HussainAther

Alternative splicing resource

created at March 31, 2018, 1:16 a.m.

4 +0

45 +0

9 +0

fujiplot by mkanai

Fuji plot—a circos representation of multiple GWAS results—

created at Feb. 10, 2018, 12:23 p.m.

3 +0

66 +1

19 +0

smoove by brentp

structural variant calling and genotyping with existing tools, but, smoothly.

created at Jan. 27, 2018, 3:03 a.m.

10 +0

219 +0

21 +0

wdl by broadinstitute

Workflow Description Language - Specification and Implementations

created at Jan. 12, 2018, 6:20 p.m.

11 +0

26 +0

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FastQC by s-andrews

A quality control analysis tool for high throughput sequencing data

created at Dec. 21, 2017, 11:48 a.m.

12 +0

388 +2

79 +0

samstat by TimoLassmann

SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.

created at Dec. 11, 2017, 7:07 a.m.

3 +0

23 +0

7 +0