pyfaidx by mdshw5

Efficient pythonic random access to fasta subsequences

created at Sept. 12, 2013, 7:02 p.m.

9 +0

440 +0

73 +0

biojs by biojs

🔬A library of JavaScript components to represent biological data

created at Aug. 2, 2013, 3:05 p.m.

70 +0

484 +2

121 +0

bcftools by samtools

This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

created at July 12, 2013, 12:55 p.m.

48 +0

620 +1

237 +1

manta by Illumina

Structural variant and indel caller for mapped sequencing data

created at May 30, 2013, 7:33 p.m.

41 +0

388 +0

151 +1

telseq by zd1

A software for calculating telomere length

created at May 27, 2013, 3:58 p.m.

9 +0

63 +1

26 +0

nextflow by nextflow-io

A DSL for data-driven computational pipelines

created at March 27, 2013, 11:17 a.m.

86 +0

2,540 +1

590 +2

BigDataScript by pcingola

BigDataScript: Scirpting language for big data

created at March 3, 2013, 6 p.m.

13 +0

93 +0

21 +0

bcbio-nextgen by bcbio

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

created at Feb. 6, 2013, 11:14 a.m.

87 +0

973 -1

357 +0

ruffus by cgat-developers

CGAT-ruffus is a lightweight python module for running computational pipelines

created at Jan. 6, 2013, 10:20 p.m.

11 +0

171 +0

34 +0

bowtie2 by BenLangmead

A fast and sensitive gapped read aligner

created at Dec. 20, 2012, 7:25 p.m.

30 +0

619 +2

162 +0

wormtable by wormtable

Write-once-read-many table for large datasets.

created at Oct. 27, 2012, 5:01 p.m.

6 +0

27 +0

5 +0

lumpy-sv by arq5x

lumpy: a general probabilistic framework for structural variant discovery

created at Oct. 8, 2012, 9:09 a.m.

27 +0

299 +1

118 +0

grabix by arq5x

a wee tool for random access into BGZF files.

created at May 22, 2012, 1:53 p.m.

6 +0

83 +0

12 +0

seqware by SeqWare

This is the SeqWare Project's main repo.

created at May 11, 2012, 3:51 p.m.

26 +0

28 +0

17 +0

bamsurgeon by adamewing

tools for adding mutations to existing .bam files, used for testing mutation callers

created at May 10, 2012, 10:18 p.m.

15 +0

226 +1

83 +0

cyvcf by arq5x

A fast Python library for VCF files leveraging Cython for speed.

created at April 12, 2012, 6:51 p.m.

6 +0

52 +0

13 +0

seqtk by lh3

Toolkit for processing sequences in FASTA/Q formats

created at March 23, 2012, 11:24 p.m.

62 +0

1,312 +2

307 +1

samtools by samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

created at March 9, 2012, 2:49 a.m.

101 +0

1,549 +3

570 +1

tabix by samtools

Note: tabix and bgzip binaries are now part of the HTSlib project.

created at March 9, 2012, 1:46 a.m.

22 +0

91 +0

40 +0

igv by igvteam

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

created at Feb. 11, 2012, 5:30 p.m.

50 +0

609 +0

377 +1