Robust, flexible and resource-efficient pipelines using Go and the commandline
created at March 7, 2015, 9:47 p.m.
38 +0
1,052 -1
72 +0
cython + htslib == fast VCF and BCF processing
created at Aug. 12, 2015, 2:30 p.m.
7 +0
357 +0
71 +0
Interactive web-based genome browser.
created at July 1, 2010, 6:29 p.m.
34 +0
226 +0
68 +0
A Go package for engineering organisms.
created at May 29, 2020, 9 p.m.
12 +0
652 +3
Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl
created at April 14, 2014, 3:23 p.m.
22 +0
353 +0
66 +0
SIFT
created at Jan. 18, 2014, 7:20 p.m.
74 +0
470 +0
Interactive in-browser track viewer
created at Jan. 27, 2015, 8:36 p.m.
20 +0
273 +0
Access to Biological Web Services from Python.
created at Aug. 28, 2014, 3:24 p.m.
18 +0
271 +0
61 +0
FASTA/FASTQ pre-processing programs
created at Nov. 8, 2013, 1:03 p.m.
157 +0
60 +0
annotate a VCF with other VCFs/BEDs/tabixed files
created at April 29, 2015, 4 p.m.
26 +0
348 +0
56 +1
Bpipe - a tool for running and managing bioinformatics pipelines
created at Oct. 20, 2014, 4:31 a.m.
19 +0
223 +0
56 +0
Another Gtf/Gff Analysis Toolkit
created at Nov. 19, 2019, 9:35 a.m.
46 +0
411 +1
52 +0
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
created at Aug. 4, 2015, 2:08 p.m.
201 +0
50 +0
python access to UCSC genomes database
created at Sept. 2, 2011, 3:36 p.m.
17 +0
134 +0
42 +1
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
created at Jan. 15, 2020, 11:08 p.m.
14 +0
396 +3
42 +0
Create an index on a compressed text file
created at Feb. 26, 2015, 1:33 p.m.
23 +0
613 +0
41 +0
Note: tabix and bgzip binaries are now part of the HTSlib project.
created at March 9, 2012, 1:46 a.m.
91 +0
40 +0
Modular and universal bioinformatics
created at Jan. 23, 2014, 11:56 p.m.
36 +0
308 +0
39 +0
Bayesian haplotype-based mutation calling
created at Feb. 4, 2015, 9:24 a.m.
296 +0
37 +0
Yet another redundant workflow engine
created at Nov. 4, 2021, 12:14 a.m.
15 +0
489 +1