Path to a free self-taught education in Bioinformatics!
created at June 21, 2016, 11:11 p.m.
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
created at Nov. 23, 2017, 1:56 a.m.
A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
created at July 19, 2014, 3:48 p.m.
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
created at July 31, 2014, 6:58 p.m.
A suite of utilities for converting to and working with CSV, the king of tabular file formats.
created at April 1, 2011, 3 a.m.
A DSL for data-driven computational pipelines
created at March 27, 2013, 11:17 a.m.
Useful bash one-liners for bioinformatics.
created at Oct. 19, 2013, 11:33 a.m.
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
created at Feb. 6, 2013, 11:14 a.m.
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
created at April 17, 2015, 7:39 p.m.
ChIP-seq analysis notes from Ming Tang
created at June 12, 2015, 9:42 p.m.
RNAseq analysis notes from Ming Tang
created at Aug. 26, 2015, 7:37 p.m.
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.
created at Feb. 5, 2014, 8:38 p.m.