GLnexus by dnanexus-rnd

Scalable gVCF merging and joint variant calling for population sequencing projects

created at April 8, 2015, 5:05 a.m.

15 +0

135 +2

35 +0

somalier by brentp

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

created at Aug. 7, 2018, 2:52 p.m.

11 +0

254 +1

35 +0

ruffus by cgat-developers

CGAT-ruffus is a lightweight python module for running computational pipelines

created at Jan. 6, 2013, 10:20 p.m.

11 +0

171 +0

34 +0

parasail by jeffdaily

Pairwise Sequence Alignment Library

created at May 21, 2015, 7:31 p.m.

18 +0

233 +0

34 +0

circos by vigsterkr

Circos is a software package for visualizing data and information. It visualizes data in a circular layout — this makes Circos ideal for exploring relationships between objects or positions.

created at Oct. 13, 2010, 9:28 p.m.

9 +0

69 +1

32 +0

bioSyntax by bioSyntax

Syntax highlighting for computational biology

created at Dec. 5, 2017, 2:25 a.m.

17 +0

247 +0

30 +0

WFA2-lib by smarco

WFA-lib: Wavefront alignment algorithm library v2

created at June 13, 2021, 1:32 p.m.

13 +0

142 +0

29 +0

islandplot by lairdm

SVG based genome viewer written in javascript using D3

created at Nov. 6, 2013, 10:22 p.m.

5 +0

33 +0

27 +0

sra-explorer by ewels

Web application to explore the Sequence Read Archive.

created at Sept. 19, 2014, 8:15 a.m.

9 +0

188 +0

27 +0

telseq by zd1

A software for calculating telomere length

created at May 27, 2013, 3:58 p.m.

9 +0

63 +0

26 +0

seqmagick by fhcrc

An imagemagick-like frontend to Biopython SeqIO

created at Nov. 24, 2010, 12:48 a.m.

12 +0

108 +0

22 +0

biocaml by biocaml

OCaml Bioinformatics Library

created at March 22, 2010, 10:08 p.m.

15 +0

121 +0

21 +0

BigDataScript by pcingola

BigDataScript: Scirpting language for big data

created at March 3, 2013, 6 p.m.

13 +0

93 +0

21 +0

smoove by brentp

structural variant calling and genotyping with existing tools, but, smoothly.

created at Jan. 27, 2018, 3:03 a.m.

10 +0

220 +1

21 +0

fujiplot by mkanai

Fuji plot—a circos representation of multiple GWAS results—

created at Feb. 10, 2018, 12:23 p.m.

3 +0

66 +0

19 +0

seqware by SeqWare

This is the SeqWare Project's main repo.

created at May 11, 2012, 3:51 p.m.

26 +0

28 +0

17 +0

SKESA by ncbi

SKESA assembler

created at July 11, 2018, 8:13 p.m.

17 +0

104 +0

16 +0

Scribl by chmille4

HTML5 canvas genomic graphics library

created at Dec. 12, 2010, 9:18 p.m.

4 +0

76 +0

14 +0

fastqp by mdshw5

Simple FASTQ quality assessment using Python

created at Sept. 23, 2013, 8:01 p.m.

6 +0

107 +0

14 +0

cyvcf by arq5x

A fast Python library for VCF files leveraging Cython for speed.

created at April 12, 2012, 6:51 p.m.

6 +0

52 +0

13 +0