ChIP-seq analysis notes from Ming Tang
created at June 12, 2015, 9:42 p.m.
RNAseq analysis notes from Ming Tang
created at Aug. 26, 2015, 7:37 p.m.
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
created at July 31, 2014, 6:58 p.m.
Path to a free self-taught education in Bioinformatics!
created at June 21, 2016, 11:11 p.m.
SVG based genome viewer written in javascript using D3
created at Nov. 6, 2013, 10:22 p.m.
Flexible circular visualization of genome-associated data with BioPerl and SVG.
created at Sept. 13, 2013, 8:19 p.m.
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.
created at Feb. 5, 2014, 8:38 p.m.
Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")
created at May 14, 2010, 9:09 p.m.
Access to Biological Web Services from Python.
created at Aug. 28, 2014, 3:24 p.m.
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
created at Feb. 6, 2013, 11:14 a.m.