gridss by PapenfussLab

GRIDSS: the Genomic Rearrangement IDentification Software Suite

created at June 11, 2015, 11 a.m.

24 +0

242 +0

73 +0

lumpy-sv by arq5x

lumpy: a general probabilistic framework for structural variant discovery

created at Oct. 8, 2012, 9:09 a.m.

27 +0

298 +0

118 +0

manta by Illumina

Structural variant and indel caller for mapped sequencing data

created at May 30, 2013, 7:33 p.m.

41 +0

388 +2

150 +0

smoove by brentp

structural variant calling and genotyping with existing tools, but, smoothly.

created at Jan. 27, 2018, 3:03 a.m.

10 +0

219 +0

21 +0

GLnexus by dnanexus-rnd

Scalable gVCF merging and joint variant calling for population sequencing projects

created at April 8, 2015, 5:05 a.m.

15 +0

132 +1

35 +0

ggd-cli by gogetdata

The command-line interface to GGD

created at April 22, 2016, 3:36 p.m.

5 +0

42 +1

3 +0

gsort by brentp

sort genomic data

created at April 15, 2016, 6:41 p.m.

5 +0

35 +0

1 +0

dalliance by dasmoth

Interactive web-based genome browser.

created at July 1, 2010, 6:29 p.m.

34 +0

226 +0

68 +0

squiggle by IQTLabs

📈 DNA Sequence Visualization for Humans

created at July 4, 2018, 3:47 a.m.

6 +0

38 +0

8 +0

jbrowse by GMOD

JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.

created at Jan. 16, 2009, 11:30 a.m.

51 +0

457 +0

197 +0

biojs by biojs

🔬A library of JavaScript components to represent biological data

created at Aug. 2, 2013, 3:05 p.m.

70 +0

482 +0

121 +0

bioSyntax by bioSyntax

Syntax highlighting for computational biology

created at Dec. 5, 2017, 2:25 a.m.

17 +0

245 +0

30 +0

circos by vigsterkr

Circos is a software package for visualizing data and information. It visualizes data in a circular layout — this makes Circos ideal for exploring relationships between objects or positions.

created at Oct. 13, 2010, 9:28 p.m.

9 +0

68 +0

32 +0

bionode by bionode

Modular and universal bioinformatics

created at Jan. 23, 2014, 11:56 p.m.

36 +0

308 +1

39 +0

igv by igvteam

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

created at Feb. 11, 2012, 5:30 p.m.

50 +0

609 +0

376 +0

bpipe by ssadedin

Bpipe - a tool for running and managing bioinformatics pipelines

created at Oct. 20, 2014, 4:31 a.m.

19 +0

223 +0

56 +0

seqware by SeqWare

This is the SeqWare Project's main repo.

created at May 11, 2012, 3:51 p.m.

26 +0

28 +0

17 +0

ruffus by cgat-developers

CGAT-ruffus is a lightweight python module for running computational pipelines

created at Jan. 6, 2013, 10:20 p.m.

11 +0

171 +0

34 +0

sift by teamdfir

SIFT

created at Jan. 18, 2014, 7:20 p.m.

74 +0

470 +1

66 +0

FastQC by s-andrews

A quality control analysis tool for high throughput sequencing data

created at Dec. 21, 2017, 11:48 a.m.

12 +0

386 +2

79 +1