SKESA by ncbi

SKESA assembler

created at July 11, 2018, 8:13 p.m.

17 +0

105 +1

16 +0

AGAT by NBISweden

Another Gtf/Gff Analysis Toolkit

created at Nov. 19, 2019, 9:35 a.m.

46 +0

411 +1

52 +0

ngs-preprocess by fmalmeida

A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies

created at Sept. 19, 2019, 7:01 p.m.

4 +0

28 +0

4 +0

bakta by oschwengers

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

created at Jan. 15, 2020, 11:08 p.m.

14 +0

396 +3

42 +0

spades by ablab

SPAdes Genome Assembler

created at June 1, 2016, 3:06 p.m.

32 +0

676 +8

131 +0

prokka by tseemann

Rapid prokaryotic genome annotation

created at March 26, 2014, 7:19 a.m.

44 +0

760 +2

217 +1

seqfu2 by telatin

seqfu - Sequece Fastx Utilities

created at Nov. 26, 2020, 3:50 p.m.

3 +0

102 +0

6 +0

Flye by fenderglass

De novo assembler for single molecule sequencing reads using repeat graphs

created at March 17, 2016, 10:47 p.m.

28 +0

731 +3

160 +0

hifiasm by chhylp123

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

created at May 9, 2019, 7:34 p.m.

29 +0

481 +6

78 +0

wtdbg2 by ruanjue

Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly

created at Sept. 29, 2017, 10:24 a.m.

31 +0

493 +0

89 +0

canu by marbl

A single molecule sequence assembler for genomes large and small.

created at Aug. 21, 2015, 3:10 a.m.

54 +0

632 +1

177 +0

bacannot by fmalmeida

Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.

created at Oct. 23, 2019, 5:51 p.m.

4 +0

94 +0

9 +0

genozip by divonlan

A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too

created at Dec. 15, 2019, 5:23 a.m.

1 +0

149 +0

10 +0

somalier by brentp

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

created at Aug. 7, 2018, 2:52 p.m.

11 +0

254 +0

35 +0

scipipe by scipipe

Robust, flexible and resource-efficient pipelines using Go and the commandline

created at March 7, 2015, 9:47 p.m.

38 +0

1,052 -1

72 +0

bioperl-live by bioperl

Core BioPerl 1.x code

created at May 12, 2010, 5:13 p.m.

54 +0

288 -1

178 +0

diamond by bbuchfink

Accelerated BLAST compatible local sequence aligner.

created at March 10, 2015, 11:19 p.m.

36 +0

964 +3

171 +1

redun by insitro

Yet another redundant workflow engine

created at Nov. 4, 2021, 12:14 a.m.

15 +0

489 +1

37 +0

awesome-AI-based-protein-design by opendilab

A collection of research papers for AI-based protein design

created at Nov. 7, 2022, 10:08 a.m.

2 +0

185 +2

12 +1

WFA2-lib by smarco

WFA-lib: Wavefront alignment algorithm library v2

created at June 13, 2021, 1:32 p.m.

14 +1

147 +5

29 +0