r-peridot by pentalpha

Software for intuitively doing Differential Gene Expression (DGE) analysis on Windows and GNU\Linux, based on R packages.

updated at Aug. 3, 2023, 1:40 p.m.

Java

2 +0

4 +0

0 +0

GitHub
wdl by broadinstitute

Workflow Description Language - Specification and Implementations

updated at Jan. 25, 2024, 7:02 a.m.

Java

11 +0

26 +0

6 +0

GitHub
gatk by broadgsa

Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk repository

updated at Feb. 20, 2024, 7:20 a.m.

Java

68 +0

293 +0

222 +0

GitHub
seqware by SeqWare

This is the SeqWare Project's main repo.

updated at March 31, 2024, 2:12 p.m.

Java

26 +0

28 +0

17 +0

GitHub
SnpEff by pcingola

None

updated at April 29, 2024, 3:56 p.m.

Java

25 +1

230 +2

74 +0

GitHub
gridss by PapenfussLab

GRIDSS: the Genomic Rearrangement IDentification Software Suite

updated at May 2, 2024, 1:11 a.m.

Java

24 +0

244 +1

73 +0

GitHub
igv by igvteam

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

updated at May 2, 2024, 2:22 p.m.

Java

50 +0

610 +1

377 +0

GitHub
FastQC by s-andrews

A quality control analysis tool for high throughput sequencing data

updated at May 4, 2024, 1:20 p.m.

Java

13 +1

393 +5

79 +0

GitHub