RNA-seq-analysis by crazyhottommy

RNAseq analysis notes from Ming Tang

updated at May 8, 2024, 8:01 a.m.

78 +0

840 +1

290 +0

bcbio-nextgen by bcbio

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

updated at May 8, 2024, 8:44 a.m.

87 +0

975 +1

357 +0

ChIP-seq-analysis by crazyhottommy

ChIP-seq analysis notes from Ming Tang

updated at May 8, 2024, 12:54 p.m.

65 +0

709 +1

290 +0

PyVCF by jamescasbon

A Variant Call Format reader for Python.

updated at May 9, 2024, 10:25 a.m.

31 +0

393 +1

199 +0

pyfaidx by mdshw5

Efficient pythonic random access to fasta subsequences

updated at May 9, 2024, 8:13 p.m.

9 +0

441 +1

73 +0

csvkit by wireservice

A suite of utilities for converting to and working with CSV, the king of tabular file formats.

updated at May 10, 2024, 8:16 a.m.

128 +0

5,833 +10

603 +0

biopython by biopython

Official git repository for Biopython (originally converted from CVS)

updated at May 10, 2024, 3:23 p.m.

168 +0

4,181 +6

1,717 +3

deepvariant by google

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

updated at May 10, 2024, 3:28 p.m.

159 +0

3,084 +4

696 +1

bakta by oschwengers

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

updated at May 10, 2024, 5:06 p.m.

14 +0

396 +3

42 +0

hail by hail-is

Cloud-native genomic dataframes and batch computing

updated at May 11, 2024, 1:20 p.m.

55 +0

938 +0

235 +0