bioservices by cokelaer

Access to Biological Web Services from Python.

updated at April 28, 2024, 7:28 p.m.

18 +0

271 +0

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redun by insitro

Yet another redundant workflow engine

updated at April 28, 2024, 8:59 p.m.

15 +0

488 +2

37 +0

zindex by mattgodbolt

Create an index on a compressed text file

updated at April 28, 2024, 11:13 p.m.

23 +0

613 -1

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pyensembl by openvax

Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl

updated at April 29, 2024, 12:48 a.m.

22 +0

353 +1

66 +0

SnpEff by pcingola

None

updated at April 29, 2024, 3:56 p.m.

25 +1

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poapy by ljdursi

A simple Partial Order Aligner based on Lee, Grasso and Sharlow (2002), for education/demonstration purposes

updated at April 29, 2024, 5:18 p.m.

8 +0

69 +1

12 +0

csvtk by shenwei356

A cross-platform, efficient and practical CSV/TSV toolkit in Golang

updated at April 30, 2024, 12:45 a.m.

25 +0

956 +1

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seqfu2 by telatin

seqfu - Sequece Fastx Utilities

updated at April 30, 2024, 1:05 a.m.

3 +0

102 +1

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poly by bebop

A Go package for engineering organisms.

updated at April 30, 2024, 1:27 a.m.

12 +0

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circos by vigsterkr

Circos is a software package for visualizing data and information. It visualizes data in a circular layout — this makes Circos ideal for exploring relationships between objects or positions.

updated at April 30, 2024, 8:57 a.m.

9 +0

69 +1

32 +0

bakta by oschwengers

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

updated at April 30, 2024, 10:34 a.m.

14 +0

393 +2

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ngs-preprocess by fmalmeida

A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies

updated at April 30, 2024, 8:36 p.m.

4 +0

28 +0

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bwa by lh3

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

updated at April 30, 2024, 10:02 p.m.

107 +0

1,454 +1

544 +0

mummer by mummer4

Mummer alignment tool

updated at May 1, 2024, 7:32 a.m.

20 +0

420 +1

108 +0

smoove by brentp

structural variant calling and genotyping with existing tools, but, smoothly.

updated at May 1, 2024, 8:01 a.m.

10 +0

220 +1

21 +0

bedtools by arq5x

A powerful toolset for genome arithmetic.

updated at May 1, 2024, 8:58 a.m.

20 +0

140 +1

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freebayes by freebayes

Bayesian haplotype-based genetic polymorphism discovery and genotyping.

updated at May 1, 2024, 9:52 a.m.

46 +0

747 +1

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WFA2-lib by smarco

WFA-lib: Wavefront alignment algorithm library v2

updated at May 1, 2024, 1:35 p.m.

13 +0

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pileup.js by hammerlab

Interactive in-browser track viewer

updated at May 1, 2024, 2:22 p.m.

20 +0

273 +1

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delly by dellytools

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

updated at May 1, 2024, 3:27 p.m.

34 +0

401 +1

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