deepvariant by google

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

updated at May 10, 2024, 3:28 p.m.

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Flye by fenderglass

De novo assembler for single molecule sequencing reads using repeat graphs

updated at May 10, 2024, 3:37 p.m.

28 +0

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nextflow by nextflow-io

A DSL for data-driven computational pipelines

updated at May 10, 2024, 4:27 p.m.

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bioinformatics by ossu

Path to a free self-taught education in Bioinformatics!

updated at May 10, 2024, 4:36 p.m.

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bakta by oschwengers

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

updated at May 10, 2024, 5:06 p.m.

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bcftools by samtools

This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

updated at May 10, 2024, 6:25 p.m.

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cromwell by broadinstitute

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

updated at May 10, 2024, 10:06 p.m.

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spades by ablab

SPAdes Genome Assembler

updated at May 11, 2024, 2:47 a.m.

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bioperl-live by bioperl

Core BioPerl 1.x code

updated at May 11, 2024, 5:06 a.m.

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rust-bio by rust-bio

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

updated at May 11, 2024, 6:21 a.m.

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poly by bebop

A Go package for engineering organisms.

updated at May 11, 2024, 6:29 a.m.

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telseq by zd1

A software for calculating telomere length

updated at May 11, 2024, 7:13 a.m.

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hifiasm by chhylp123

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

updated at May 11, 2024, 8:57 a.m.

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MultiQC by MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

updated at May 11, 2024, 1:18 p.m.

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hail by hail-is

Cloud-native genomic dataframes and batch computing

updated at May 11, 2024, 1:20 p.m.

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samtools by samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

updated at May 11, 2024, 2:29 p.m.

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vcftools by vcftools

A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.

updated at May 11, 2024, 2:58 p.m.

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bedtools2 by arq5x

bedtools - the swiss army knife for genome arithmetic

updated at May 11, 2024, 3:18 p.m.

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diamond by bbuchfink

Accelerated BLAST compatible local sequence aligner.

updated at May 11, 2024, 4:12 p.m.

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csvtk by shenwei356

A cross-platform, efficient and practical CSV/TSV toolkit in Golang

updated at May 11, 2024, 4:27 p.m.

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