diamond by bbuchfink

Accelerated BLAST compatible local sequence aligner.

updated at April 21, 2024, 10:13 a.m.

37 +0

954 +3

170 +1

Flye by fenderglass

De novo assembler for single molecule sequencing reads using repeat graphs

updated at April 21, 2024, 8:53 a.m.

28 +0

725 +4

159 +0

csvtk by shenwei356

A cross-platform, efficient and practical CSV/TSV toolkit in Golang

updated at April 21, 2024, 8:32 a.m.

25 +0

951 +2

84 +1

rust-bio by rust-bio

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

updated at April 21, 2024, 7:09 a.m.

70 +0

1,496 +8

197 +0

awesome-pipeline by pditommaso

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

updated at April 21, 2024, 6:48 a.m.

234 +0

5,904 +9

615 +0

rnaseq_tutorial by griffithlab

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

updated at April 21, 2024, 6:43 a.m.

184 -1

1,310 +1

615 +0

csvkit by wireservice

A suite of utilities for converting to and working with CSV, the king of tabular file formats.

updated at April 21, 2024, 4:51 a.m.

131 +0

5,812 +4

600 +0

freebayes by freebayes

Bayesian haplotype-based genetic polymorphism discovery and genotyping.

updated at April 21, 2024, 3:27 a.m.

46 +0

744 +1

259 +1

bioinformatics by ossu

Path to a free self-taught education in Bioinformatics!

updated at April 21, 2024, 2:40 a.m.

357 +1

5,001 +9

842 +0

MultiQC by MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

updated at April 21, 2024, 2:17 a.m.

36 +0

1,163 +2

578 +2

awesome-AI-based-protein-design by opendilab

A collection of research papers for AI-based protein design

updated at April 21, 2024, 2:11 a.m.

2 +0

181 +1

11 +0

seqan3 by seqan

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

updated at April 20, 2024, 7:48 p.m.

24 +0

387 +2

80 +0

manta by Illumina

Structural variant and indel caller for mapped sequencing data

updated at April 20, 2024, 3:14 p.m.

41 +0

388 +2

150 +0

gffutils by daler

GFF and GTF file manipulation and interconversion

updated at April 20, 2024, 11:22 a.m.

14 +0

265 +1

74 +0

WFA2-lib by smarco

WFA-lib: Wavefront alignment algorithm library v2

updated at April 20, 2024, 10:22 a.m.

13 +0

139 +1

29 +0

vcflib by vcflib

C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings

updated at April 20, 2024, 10 a.m.

39 +0

593 +1

217 +0

RSEM by deweylab

RSEM: accurate quantification of gene and isoform expression from RNA-Seq data

updated at April 20, 2024, 9:48 a.m.

23 +0

395 +1

117 +0

seqtk by lh3

Toolkit for processing sequences in FASTA/Q formats

updated at April 20, 2024, 8:40 a.m.

62 +0

1,310 +2

306 +0

biopython by biopython

Official git repository for Biopython (originally converted from CVS)

updated at April 20, 2024, 6:59 a.m.

170 -1

4,160 +12

1,711 +2

hail by hail-is

Cloud-native genomic dataframes and batch computing

updated at April 20, 2024, 3:16 a.m.

55 +0

936 +2

234 -2