RNAseq analysis notes from Ming Tang
updated at May 8, 2024, 8:01 a.m.
Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊
updated at May 7, 2024, 9:45 p.m.
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
updated at May 6, 2024, 2:26 p.m.
Useful bash one-liners for bioinformatics.
updated at May 6, 2024, 12:35 p.m.
A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
updated at May 6, 2024, 6:36 a.m.
C++ API & command-line toolkit for working with BAM data
updated at May 6, 2024, 3:08 a.m.
Scalable gVCF merging and joint variant calling for population sequencing projects
updated at May 5, 2024, 5:51 a.m.
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.
updated at May 3, 2024, 4:14 a.m.
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
updated at May 3, 2024, 2:10 a.m.