poapy by ljdursi

A simple Partial Order Aligner based on Lee, Grasso and Sharlow (2002), for education/demonstration purposes

updated at April 29, 2024, 5:18 p.m.

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pyensembl by openvax

Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl

updated at April 29, 2024, 12:48 a.m.

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genozip by divonlan

A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too

updated at April 28, 2024, 2:04 p.m.

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fujiplot by mkanai

Fuji plot—a circos representation of multiple GWAS results—

updated at April 28, 2024, 1:50 a.m.

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bioSyntax by bioSyntax

Syntax highlighting for computational biology

updated at April 27, 2024, 3:49 p.m.

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Circleator by jonathancrabtree

Flexible circular visualization of genome-associated data with BioPerl and SVG.

updated at April 27, 2024, 3:44 p.m.

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biojs by biojs

🔬A library of JavaScript components to represent biological data

updated at April 26, 2024, 1:11 a.m.

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cruzdb by brentp

python access to UCSC genomes database

updated at April 23, 2024, 8:01 p.m.

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bamsurgeon by adamewing

tools for adding mutations to existing .bam files, used for testing mutation callers

updated at April 23, 2024, 8:44 a.m.

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vcfanno by brentp

annotate a VCF with other VCFs/BEDs/tabixed files

updated at April 22, 2024, 5:21 p.m.

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manta by Illumina

Structural variant and indel caller for mapped sequencing data

updated at April 20, 2024, 3:14 p.m.

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bionode by bionode

Modular and universal bioinformatics

updated at April 17, 2024, 1:03 p.m.

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ggd-cli by gogetdata

The command-line interface to GGD

updated at April 17, 2024, 12:59 p.m.

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BigDataScript by pcingola

BigDataScript: Scirpting language for big data

updated at April 17, 2024, 11:09 a.m.

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samstat by TimoLassmann

SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.

updated at April 12, 2024, 3:15 a.m.

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tabix by samtools

Note: tabix and bgzip binaries are now part of the HTSlib project.

updated at April 11, 2024, 6:37 a.m.

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biocaml by biocaml

OCaml Bioinformatics Library

updated at April 11, 2024, 5:57 a.m.

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pybedtools by daler

Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")

updated at April 11, 2024, 12:51 a.m.

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seqmagick by fhcrc

An imagemagick-like frontend to Biopython SeqIO

updated at March 31, 2024, 9:30 p.m.

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seqware by SeqWare

This is the SeqWare Project's main repo.

updated at March 31, 2024, 2:12 p.m.

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