wtdbg2 by ruanjue

Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly

updated at April 23, 2024, 11:16 a.m.

31 -1

493 +1

89 +0

redun by insitro

Yet another redundant workflow engine

updated at April 23, 2024, 9:54 a.m.

15 +0

486 +2

37 +0

bamsurgeon by adamewing

tools for adding mutations to existing .bam files, used for testing mutation callers

updated at April 23, 2024, 8:44 a.m.

15 +0

226 +1

83 +0

deepvariant by google

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

updated at April 22, 2024, 11:23 p.m.

160 +0

3,077 +1

695 +1

vcfanno by brentp

annotate a VCF with other VCFs/BEDs/tabixed files

updated at April 22, 2024, 5:21 p.m.

26 +0

348 +2

55 +0

bcbio-nextgen by bcbio

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

updated at April 22, 2024, 11:12 a.m.

87 +0

973 -1

357 +0

gridss by PapenfussLab

GRIDSS: the Genomic Rearrangement IDentification Software Suite

updated at April 22, 2024, 6:19 a.m.

24 +0

243 +1

73 +0

awesome-AI-based-protein-design by opendilab

A collection of research papers for AI-based protein design

updated at April 21, 2024, 11:16 p.m.

2 +0

182 +1

11 +0

SKESA by ncbi

SKESA assembler

updated at April 21, 2024, 1:56 p.m.

17 +1

104 +1

16 +0

genozip by divonlan

A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too

updated at April 21, 2024, 1:22 p.m.

1 +0

148 +0

10 +0

manta by Illumina

Structural variant and indel caller for mapped sequencing data

updated at April 20, 2024, 3:14 p.m.

41 +0

388 +0

151 +1

sra-explorer by ewels

Web application to explore the Sequence Read Archive.

updated at April 19, 2024, 11:54 p.m.

9 +0

188 +0

27 +0

poapy by ljdursi

A simple Partial Order Aligner based on Lee, Grasso and Sharlow (2002), for education/demonstration purposes

updated at April 18, 2024, 7:29 p.m.

8 +0

68 +0

12 +0

scipipe by scipipe

Robust, flexible and resource-efficient pipelines using Go and the commandline

updated at April 18, 2024, 12:11 p.m.

38 +0

1,054 +0

72 +0

igv by igvteam

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

updated at April 18, 2024, 6:23 a.m.

50 +0

609 +0

377 +1

somalier by brentp

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

updated at April 17, 2024, 1:05 p.m.

11 +0

253 +0

35 +0

bionode by bionode

Modular and universal bioinformatics

updated at April 17, 2024, 1:03 p.m.

36 +0

308 +0

39 +0

ggd-cli by gogetdata

The command-line interface to GGD

updated at April 17, 2024, 12:59 p.m.

5 +0

42 +0

3 +0

BigDataScript by pcingola

BigDataScript: Scirpting language for big data

updated at April 17, 2024, 11:09 a.m.

13 +0

93 +0

21 +0

sift by teamdfir

SIFT

updated at April 14, 2024, 9:10 p.m.

74 +0

470 +0

66 +0