bakta by oschwengers

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

created at Jan. 15, 2020, 11:08 p.m.

14 +0

391 +5

42 +0

gffutils by daler

GFF and GTF file manipulation and interconversion

created at Oct. 12, 2011, 1:48 p.m.

14 +0

267 +2

74 +0

WFA2-lib by smarco

WFA-lib: Wavefront alignment algorithm library v2

created at June 13, 2021, 1:32 p.m.

13 +0

142 +3

29 +0

BigDataScript by pcingola

BigDataScript: Scirpting language for big data

created at March 3, 2013, 6 p.m.

13 +0

93 +0

21 +0

FastQC by s-andrews

A quality control analysis tool for high throughput sequencing data

created at Dec. 21, 2017, 11:48 a.m.

12 +0

388 +2

79 +0

seqmagick by fhcrc

An imagemagick-like frontend to Biopython SeqIO

created at Nov. 24, 2010, 12:48 a.m.

12 +0

108 +0

22 +0

poly by bebop

A Go package for engineering organisms.

created at May 29, 2020, 9 p.m.

12 +0

649 +1

68 +0

ruffus by cgat-developers

CGAT-ruffus is a lightweight python module for running computational pipelines

created at Jan. 6, 2013, 10:20 p.m.

11 +0

171 +0

34 +0

somalier by brentp

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

created at Aug. 7, 2018, 2:52 p.m.

11 +0

253 +0

35 +0

wdl by broadinstitute

Workflow Description Language - Specification and Implementations

created at Jan. 12, 2018, 6:20 p.m.

11 +0

26 +0

6 +0

bam-toolbox by AndersenLab

A bam toolbox

created at Oct. 28, 2015, 4:36 p.m.

10 +0

1 +0

1 +0

smoove by brentp

structural variant calling and genotyping with existing tools, but, smoothly.

created at Jan. 27, 2018, 3:03 a.m.

10 +0

219 +0

21 +0

sra-explorer by ewels

Web application to explore the Sequence Read Archive.

created at Sept. 19, 2014, 8:15 a.m.

9 +0

188 +0

27 +0

pyfaidx by mdshw5

Efficient pythonic random access to fasta subsequences

created at Sept. 12, 2013, 7:02 p.m.

9 +0

440 +0

73 +0

telseq by zd1

A software for calculating telomere length

created at May 27, 2013, 3:58 p.m.

9 +0

63 +1

26 +0

circos by vigsterkr

Circos is a software package for visualizing data and information. It visualizes data in a circular layout — this makes Circos ideal for exploring relationships between objects or positions.

created at Oct. 13, 2010, 9:28 p.m.

9 +0

68 +0

32 +0

dnaism by drio

Horizon chart js library for DNA data.

created at Jan. 6, 2014, 4:33 p.m.

8 +0

60 +0

6 +0

poapy by ljdursi

A simple Partial Order Aligner based on Lee, Grasso and Sharlow (2002), for education/demonstration purposes

created at April 28, 2015, 9:38 p.m.

8 +0

68 +0

12 +0

cyvcf2 by brentp

cython + htslib == fast VCF and BCF processing

created at Aug. 12, 2015, 2:30 p.m.

7 +0

357 +0

70 +0

cyvcf by arq5x

A fast Python library for VCF files leveraging Cython for speed.

created at April 12, 2012, 6:51 p.m.

6 +0

52 +0

13 +0