BioGPT by Microsoft

None

created at Aug. 15, 2022, 5:55 a.m.

Python

71 +0

4,328 +6

451 +0

GitHub
esm by facebookresearch

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

created at Aug. 31, 2020, 5:41 p.m.

Python

65 +0

3,329 +24

656 +9

GitHub
rdkit by rdkit

The official sources for the RDKit library

created at May 12, 2013, 6:19 a.m.

HTML

78 -1

2,711 +9

880 +0

GitHub
DeepPurpose by kexinhuang12345

A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)

created at March 19, 2020, 12:32 a.m.

Jupyter Notebook

31 +0

988 +5

277 +3

GitHub
DRKG by gnn4dr

A knowledge graph and a set of tools for drug repurposing

created at April 9, 2020, 5:21 a.m.

Jupyter Notebook

26 +0

596 +1

155 +0

GitHub
cdk by cdk

The Chemistry Development Kit

created at May 11, 2010, 8:30 a.m.

Java

40 +0

501 +1

162 +0

GitHub
bert-loves-chemistry by seyonechithrananda

bert-loves-chemistry: a repository of HuggingFace models applied on chemical SMILES data for drug design, chemical modelling, etc.

created at April 1, 2020, 11:39 p.m.

Jupyter Notebook

8 +0

412 +1

64 +0

GitHub
GeneGPT by ncbi

Code and data for GeneGPT.

created at April 25, 2023, 2:55 p.m.

Python

19 +0

382 +0

32 +1

GitHub
GenePT by yiqunchen

None

created at Oct. 3, 2023, 8:24 p.m.

Jupyter Notebook

8 +0

209 +13

31 +2

GitHub
transformerCPI by lifanchen-simm

TransformerCPI: Improving compound–protein interaction prediction by sequence-based deep learning with self-attention mechanism and label reversal experiments(BIOINFORMATICS 2020) https://doi.org/10.1093/bioinformatics/btaa524

created at March 6, 2020, 12:59 p.m.

Python

2 +0

134 +0

40 +0

GitHub
NeoDTI by FangpingWan

NeoDTI: Neural integration of neighbor information from a heterogeneous network for discovering new drug-target interactions

created at March 26, 2018, 1:56 a.m.

Python

5 +0

75 +0

34 +0

GitHub
scPRINT by cantinilab

single cell foundation model for Gene network inference and more

created at Aug. 7, 2024, 2:40 p.m.

Jupyter Notebook

0 +0

35 +4

4 +2

GitHub
multi_channels_PINN by mhlee0903

None

created at Oct. 1, 2018, 11:25 a.m.

Python

0 +0

3 +0

3 +0

GitHub
drGAT by inoue0426

None

created at March 5, 2024, 1:18 a.m.

Jupyter Notebook

4 +0

3 +0

0 +0

GitHub
DeepAEG by zhejiangzhuque

None

created at Dec. 26, 2023, 2:51 a.m.

Python

1 +0

2 +0

0 +0

GitHub
heteronet by minwoopak

GNN-based gene-selection deep learning model for drug response prediction

created at Jan. 19, 2024, 5:14 a.m.

Python

1 +0

0 +0

1 +0

GitHub