Z-stack Depth Colorcode ImageJ FIJI plugin
created at Jan. 11, 2021, 3:31 p.m.
Plugins for ImageJ - color space conversions and color calibration
created at April 28, 2014, 2:59 a.m.
Digital Imaging of Root Traits: Extract trait measurements from images of monocot and dicot roots.
created at Sept. 9, 2014, 10:56 p.m.
Efficient cell detection in large images using cellfinder in napari
created at Jan. 22, 2021, 1:21 p.m.
Single-cell fluorescence microscopy data analysis
created at May 30, 2017, 12:26 p.m.
Codebase for "A Foundation Model for Cell Segmentation"
created at Feb. 14, 2024, 10:41 p.m.
HistoClean is a tool for the preprocessing and augmentation of images used in deep learning models. This easy to use application brings together the most popular image processing packages from across the python universe, meaning no more looking at documentation! HistoClean provides real time feedback to augmentations and preprocessing options. This allows users to evaluate their steps before implementation.
created at May 5, 2021, 3:38 p.m.
Noise Correction Algorithm for sCMOS cameras
created at July 10, 2017, 7:26 p.m.
Multiple file format reading directly into napari using pure Python
created at March 20, 2020, 5:52 p.m.
Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
created at April 10, 2023, 8:42 p.m.
ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.
created at Nov. 7, 2017, 10:11 a.m.
A versatile, fully open-source pipeline to extract phenotypic measurements from plant images
created at Feb. 13, 2020, 3 p.m.