ijp-color by ij-plugins
Plugins for ImageJ - color space conversions and color calibration
created at April 28, 2014, 2:59 a.m.
Cell_ACDC by SchmollerLab
A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
created at Feb. 25, 2021, 4:14 p.m.
SimpleElastix by SuperElastix
Multi-lingual medical image registration library
created at Nov. 20, 2014, 9:51 a.m.
big-fish by fish-quant
Toolbox for the analysis of smFISH images.
created at Dec. 17, 2018, 12:26 p.m.
TrackMate by trackmate-sc
TrackMate is your buddy for your everyday tracking.
created at Dec. 19, 2013, 8:01 p.m.
ZetaStitcher by lens-biophotonics
ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.
created at Nov. 7, 2017, 10:11 a.m.
CellMigration by quantixed
Analysis of cell migration in Igor Pro
created at Aug. 19, 2015, 12:10 p.m.
axondeepseg by axondeepseg
Axon/Myelin segmentation using Deep Learning
created at Sept. 26, 2016, 2:20 p.m.
cloud-volume by seung-lab
Read and write Neuroglancer datasets programmatically.
created at July 25, 2017, 5:34 p.m.
OAD by zeiss-microscopy
Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.
created at Oct. 27, 2018, 4:42 p.m.
ddpsc_phenotypercv by jberry47
Header-only C++11 library using OpenCV for high-throughput image-based plant phenotyping
created at Nov. 7, 2018, 1:32 p.m.
brainreg-napari by brainglobe
Automated 3D brain registration in napari with support for multiple species and atlases.
created at July 2, 2021, 2:11 p.m.