A tool for cell instance aware segmentation in densely packed 3D volumetric images
created at Oct. 18, 2019, 10:56 a.m.
ThunderSTORM: a comprehensive ImageJ plugin for SMLM data analysis and super-resolution imaging
created at May 3, 2015, 6:59 p.m.
Collection of mathematical morphology methods and plugins for ImageJ
created at Feb. 10, 2014, 1:49 p.m.
PAthological QUpath Obsession - QuPath and Python conversations
created at July 6, 2020, 12:21 p.m.
Fiji library to perform image segmentation based on the Weka learning schemes
created at April 3, 2014, 2:52 p.m.
A collection of tools for painting super-resolution images
created at Oct. 27, 2016, 8:13 a.m.
Axon/Myelin segmentation using Deep Learning
created at Sept. 26, 2016, 2:20 p.m.
Automated 3D brain registration with support for multiple species and atlases.
created at May 26, 2020, 2:36 p.m.
⚡ Open-source software for deep learning-based digital pathology
created at July 9, 2019, 12:28 p.m.
Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.
created at Oct. 27, 2018, 4:42 p.m.
A lightweight python module to interact with atlases for systems neuroscience
created at April 30, 2020, 11:10 a.m.
A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
created at Feb. 25, 2021, 4:14 p.m.
Read and write Neuroglancer datasets programmatically.
created at July 25, 2017, 5:34 p.m.
Non-comprehensive list of projects and resources related to open microscopy.
created at Sept. 28, 2021, 8:51 a.m.
Open-source software for exploring and analyzing large, high-dimensional image-derived data.
created at Nov. 10, 2011, 6:57 p.m.
TrackMate is your buddy for your everyday tracking.
created at Dec. 19, 2013, 8:01 p.m.
PyTorch Connectomics: segmentation toolbox for EM connectomics
created at March 27, 2019, 4:13 p.m.
Automated 3D cell detection in very large images
created at Jan. 17, 2020, 2:14 p.m.