plantcv by danforthcenter
Plant phenotyping with image analysis
created at March 14, 2014, 6:24 p.m.
Image processing toolbox for Rpycytominer by cytomining
Python package for processing image-based profiling data
created at July 3, 2019, 6:22 p.m.
brainrender by brainglobe
a python based software for visualization of neuroanatomical and morphological data.
created at Sept. 19, 2019, 9:27 a.m.
aicsimageio by AllenCellModeling
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
created at June 27, 2019, 4:43 p.m.
OpenMicroscopy by HohlbeinLab
Non-comprehensive list of projects and resources related to open microscopy.
created at Sept. 28, 2021, 8:51 a.m.
QuimP by CellDynamics
QuimP is software for tracking cellular shape changes and dynamic distributions of fluorescent reporters at the cell membrane.
created at Jan. 24, 2017, 11:12 a.m.
Trainable_Segmentation by fiji
Fiji library to perform image segmentation based on the Weka learning schemes
created at April 3, 2014, 2:52 p.m.
minerva-story by labsyspharm
Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue images.
created at Dec. 16, 2019, 7:39 p.m.
ark-analysis by angelolab
Integrated pipeline for multiplexed image analysis
created at Jan. 7, 2019, 4:31 a.m.
picasso by jungmannlab
A collection of tools for painting super-resolution images
created at Oct. 27, 2016, 8:13 a.m.
wholebrain by tractatus
R package for segmentation, registration and generating web-based brain atlases from microscope images
created at Oct. 29, 2015, 5:43 p.m.
cellfinder by brainglobe
Automated 3D cell detection in very large images
created at Jan. 17, 2020, 2:14 p.m.
ThermImageJ by gtatters
ImageJ functions and macros for working with thermal image files
created at April 19, 2019, 2:06 p.m.