A tool for cell instance aware segmentation in densely packed 3D volumetric images
created at Oct. 18, 2019, 10:56 a.m.
⚡ Open-source software for deep learning-based digital pathology
created at July 9, 2019, 12:28 p.m.
python functions for simulating optical transfer functions
created at Sept. 21, 2016, 3:02 p.m.
Application to extract features from plant root images
created at Jan. 30, 2019, 4:59 p.m.
Digital Imaging of Root Traits: Extract trait measurements from images of monocot and dicot roots.
created at Sept. 9, 2014, 10:56 p.m.
Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins.
created at July 1, 2016, 6:49 a.m.
Single-cell fluorescence microscopy data analysis
created at May 30, 2017, 12:26 p.m.
Segment Anything for Microscopy
created at May 3, 2023, 11:36 a.m.
PyTorch Connectomics: segmentation toolbox for EM connectomics
created at March 27, 2019, 4:13 p.m.
ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.
created at Nov. 7, 2017, 10:11 a.m.
Python package for processing image-based profiling data
created at July 3, 2019, 6:22 p.m.
Gaussian processes and Bayesian optimization for images and hyperspectral data
created at Feb. 18, 2020, 7:28 p.m.
A versatile, fully open-source pipeline to extract phenotypic measurements from plant images
created at Feb. 13, 2020, 3 p.m.
Analysis of cell migration in Igor Pro
created at Aug. 19, 2015, 12:10 p.m.
A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
created at Feb. 25, 2021, 4:14 p.m.
Automated 3D brain registration in napari with support for multiple species and atlases.
created at July 2, 2021, 2:11 p.m.
XitoSBML - the spatial SBML plugin for ImageJ
created at Nov. 3, 2016, 6:28 a.m.
RootPainter: Deep Learning Segmentation of Biological Images with Corrective Annotation
created at April 16, 2020, 12:11 a.m.
Pure Python library for reading NIS Elements ND2 images and metadata
created at Feb. 14, 2017, 3:47 p.m.