Plugins for ImageJ - color space conversions and color calibration
created at April 28, 2014, 2:59 a.m.
QuimP is software for tracking cellular shape changes and dynamic distributions of fluorescent reporters at the cell membrane.
created at Jan. 24, 2017, 11:12 a.m.
Noise Correction Algorithm for sCMOS cameras
created at July 10, 2017, 7:26 p.m.
Image classification of Fungus using ResNet
created at Oct. 14, 2019, 4:50 a.m.
Efficient cell detection in large images using cellfinder in napari
created at Jan. 22, 2021, 1:21 p.m.
Accurate segmentation of bacterial microscope images using synthetically generated image data.
created at Feb. 9, 2021, 2:57 a.m.
DetecDiv provides a comprehensive set of tools to analyze time microscopy images using deep learning methods. The software structure is such that data can be processed either at the command line or using a graphical user-interface. Detecdiv classification models include : image classification and regression, semantic segmentation, LSTM networks to analyze data and image timeseries.
created at March 18, 2020, 1:57 p.m.
Codebase for "A Foundation Model for Cell Segmentation"
created at Feb. 14, 2024, 10:41 p.m.
A package for storing morphological profiling data.
created at Jan. 6, 2016, 9 p.m.
Z-stack Depth Colorcode ImageJ FIJI plugin
created at Jan. 11, 2021, 3:31 p.m.
Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
created at April 10, 2023, 8:42 p.m.
Accurate and efficient spot detection for microscopy data
created at Feb. 2, 2024, 5:28 p.m.
Header-only C++11 library using OpenCV for high-throughput image-based plant phenotyping
created at Nov. 7, 2018, 1:32 p.m.
Fiji/ImageJ macros to quickly add a scale bar to an (electron microscopy) image.
created at Aug. 10, 2021, 9:41 a.m.
#ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720
created at Aug. 10, 2020, 1:59 p.m.