HistoClean by HistoCleanQUB

HistoClean is a tool for the preprocessing and augmentation of images used in deep learning models. This easy to use application brings together the most popular image processing packages from across the python universe, meaning no more looking at documentation! HistoClean provides real time feedback to augmentations and preprocessing options. This allows users to evaluate their steps before implementation.

created at May 5, 2021, 3:38 p.m.

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htsimaging by rraadd88

🔬Python package for high-throughput single-cell imaging analysis.

created at Feb. 21, 2016, 10:25 a.m.

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cellshape by Sentinal4D

3D shape analysis using deep learning

created at June 21, 2022, 11:25 a.m.

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ASI_MTF by emx77

Imagej macro to calculate the MTF based on a knife edge measurement

created at March 15, 2018, 11:52 p.m.

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mia by mianalysis

Modular, object-based analysis for ImageJ/Fiji

created at March 16, 2018, 11:43 a.m.

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empanada by volume-em

Panoptic segmentation algorithms for 2D and 3D electron microscopy images

created at Dec. 1, 2021, 4:02 p.m.

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BactMAP by vrrenske

gateway for segmentation data to Rstats & visualization with ggplot2 - in development

created at Oct. 4, 2016, 3:18 p.m.

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YeaZ-GUI by rahi-lab

An interactive tool for segmenting yeast cells using deep learning.

created at March 29, 2020, 7:47 p.m.

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CompactionAnalyzer by davidbhr

Evaluates the fiber orientation and intensity around cells that compact collagen tissue as measure of contractile strength.

created at July 8, 2020, 11:32 a.m.

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