opencv by opencv

Open Source Computer Vision Library

created at July 19, 2012, 9:40 a.m.

2,658 +3

76,244 +137

55,625 +4

scikit-image by scikit-image

Image processing in Python

created at July 7, 2011, 10:07 p.m.

186 +0

5,907 +6

2,207 +2

Slicer by Slicer

Multi-platform, free open source software for visualization and image computing.

created at March 12, 2020, 10:13 p.m.

38 +0

1,513 +7

514 +3

napari by napari

napari: a fast, interactive, multi-dimensional image viewer for python

created at Aug. 13, 2018, 1:12 a.m.

48 +0

2,086 +9

411 +2

CellProfiler by CellProfiler

An open-source application for biological image analysis

created at April 5, 2011, 12:10 p.m.

44 +0

869 +3

366 +0

CaImAn by flatironinstitute

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

created at Aug. 6, 2015, 1:58 p.m.

47 +0

610 +1

356 +0

cellpose by MouseLand

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

created at Feb. 1, 2020, 10:29 p.m.

30 -1

1,213 +5

349 +1

imagepy by Image-Py

Image process framework based on plugin like imagej, it is esay to glue with scipy.ndimage, scikit-image, opencv, simpleitk, mayavi...and any libraries based on numpy

created at Dec. 29, 2016, 7:35 a.m.

81 +0

1,288 +1

329 +0

imagej2 by imagej

Open scientific N-dimensional image processing

created at Jan. 26, 2012, 6:32 p.m.

92 +0

1,112 +2

328 +0

plantcv by danforthcenter

Plant phenotyping with image analysis

created at March 14, 2014, 6:24 p.m.

46 +0

621 +1

257 +0

suite2p by MouseLand

cell detection in calcium imaging recordings

created at July 16, 2018, 6:12 p.m.

18 +0

329 +0

237 +1

fiji by fiji

A "batteries-included" distribution of ImageJ

created at April 13, 2011, 10:39 p.m.

50 +0

719 +2

231 +0

stardist by stardist

StarDist - Object Detection with Star-convex Shapes

created at June 26, 2018, 7:54 p.m.

29 +0

828 +2

213 +0

ImageJ by imagej

Public domain software for processing and analyzing scientific images

created at Aug. 1, 2011, 12:29 p.m.

48 +0

496 +5

211 +1

SimpleElastix by SuperElastix

Multi-lingual medical image registration library

created at Nov. 20, 2014, 9:51 a.m.

22 +0

505 -1

149 +0

deepslide by BMIRDS

Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.

created at Dec. 26, 2018, 1:51 a.m.

17 +0

476 +0

135 +0

ilastik by ilastik

ilastik-shell, applets, and workflows to string them together.

created at May 8, 2012, 3:59 p.m.

41 +0

338 +0

130 +0

ZeroCostDL4Mic by HenriquesLab

ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy

created at Feb. 12, 2020, 9:18 a.m.

36 +0

546 +3

128 +1

n2v by juglab

This is the implementation of Noise2Void training.

created at Jan. 11, 2019, 5:43 p.m.

19 +0

378 +2

107 +1

deepcell-tf by vanvalenlab

Deep Learning Library for Single Cell Analysis

created at May 16, 2018, 5:41 p.m.

16 +0

393 +1

91 +0